BAC Information

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BAC

Clone NameMSMg01-390C06
Chromosome14 (Build37)
Map Location 46,662,706 - 46,663,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C06.T7 (MSMg01no390_c06.b1)MSMg01-390C06.TJ (MSMg01no390_c06.g1)
ACCAG492227AG492228
length802774
length of high quality
(start - end)
64 (138 - 201)395 (79 - 473)
definitionCHROMAT_FILE: MSMg01no390_c06.b1 PHD_FILE: MSMg01no390_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:58 2005CHROMAT_FILE: MSMg01no390_c06.g1 PHD_FILE: MSMg01no390_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCACACACCCGC
GGAATTCTTATGGCTATCCCTACCTGCATTCTTAGGTTGGTTATGCTTTA
GTTTTTGCTCAGATGGCAAATTCTAAACACATTTCCAAGAAAAGCAATAG
GAAAGAAATAAAGGATGTTGGTGGGAAGGGGAGAAAAGGAAGGGATGGAG
GGAGCTAGAAAATCCAGTCCCTTGATTCCAGACTTTAATGCCGTAGTTGA
TCTATAATGCCGACGCAATGACTTTAAATTCCGGAAAGGAATCCTGAGCT
CATGAAAAGTATATGTGACCGAAGGTCCTTTTTTTACCAGGCCTGGCCCT
GGCCGCCCCCACCCCCCGTGAGCACCCATGCACAAGCACTCCTCTCTCTC
CTCCCTCCCATTGCCGACCTCCCCCCCCCCTGGTTTCCGAACCCCCTCCC
AACCCTCTGAACACCACTCTCGACCTTACCCACCGCCTCCCCCCAATTGA
CCCCACGGCCTGACCCCCCCCCCCACCCACCCCCCCCCCCTCCTCCCACC
CCCCCTGCCCCCTTACCCCTTGCCCCCGCCCACCCTCCCCCCCGCCCTCC
CCCCCCCGCCCCCCCACCATCCCCCACCCCCCCCCTGCCCTTCTCCCCCC
CGCTTCCCCCTCTACCCCATCCCCCCTCTCCTCTTCCCCCACCTCCCCCC
CCTTCTCTCCTCCTTCTGTCTCTCTAACATCCTTCCCCTCTAATCCTTCC
CCCCTCCTCCCCACCTTCGCACCCCTCTCCCTCTCTCCCCTCTTCCTCCT
TC
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCGAAATTCTTGAATGAAAT
ATGACAGCTGTGTCCCAAGCTAGTAGGCCAAAACTATCAGTTTGTGTTCT
TACCACACTTTCATGTGCATCAAGAAGTTTGAATGTAACTCAGTTGGCAA
GTACTAGCCAGGAGGCCTTAGGGTTGATCCTTGGAATGACAGAAACTATG
CACAGTGGCACACACCTCCATCCCAGCATTCATGAGGTAGAGGCAGAAAG
ATCAGGAGTTCAAGGTCATCCTAGACTACAAAGTAAATTTGAGGGCAGCA
TGGGCTGCGTGAGATATTGCCTTAATGAAGAAAGCACGGATGGGTGGTGG
GAAGATGACAAGAAGCAGGAGAAGGGGAAGAGGAAGAGGCACCGAGGGCC
TAAGACTCTTTGGTCTGATTTAGACTACGAAGGATAATCATTCTAATTCG
AAATCATTTTAATTTGAAATGCATAACAAAGTATATAGTATTTTTCTCAT
TGAAAATCTTGACCTGATAGAAAATGAGATTTCTTATCCTGTTGAAATCA
ACTTCTTATTTGGTATAACCATCCCTGCCTCTGCATCACTTGACCCATAT
CCCCCAATGCACTCTGCGGTCTACAATTACCTCCTCTCTACTTTAATGGC
TACTTCCTGTGCGCCCAAATATTTCCACCTATCTTCATTGGCCTGTTCTG
CCTAACCAATCGAACTTACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c06.g1 MSMg01no390_c06.g1 CHROMAT_FILE:
MSMg01no390_c06.g1 PHD_FILE: MSMg01no390_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:58 2005
         (395 letters)



>mm_chr14_46662706_46663500
          Length = 795

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcgaaattcttgaatgaaatatgacagctgtgtcccaagctagtaggccaaaactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctcgaaattcttgaatgaaatatgacagctgtgtcccaagctagtaggccaaaactatc 243

                                                                       
Query: 61  agtttgtgttcttaccacactttcatgtgcatcaagaagtttgaatgtaactcagttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtttgtgttcttaccacactttcatgtgcatcaagaagtttgaatgtaactcagttggc 183

                                                                       
Query: 121 aagtactagccaggaggccttagggttgatccttggaatgacagaaactatgcacagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aagtactagccaggaggccttagggttgatccttggaatgacagaaactatgcacagtgg 123

                                                                       
Query: 181 cacacacctccatcccagcattcatgaggtagaggcagaaagatcaggagttcaaggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cacacacctccatcccagcattcatgaggtagaggcagaaagatcaggagttcaaggtca 63

                                                                       
Query: 241 tcctagactacaaagtaaatttgagggcagcatgggctgcgtgagatattgccttaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tcctagactacaaagtaaatttgagggcagcatgggctgcgtgagatattgccttaatga 3

             
Query: 301 ag 302
           ||
Sbjct: 2   ag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)