BAC Information

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BAC

Clone NameMSMg01-390I09
Chromosome14 (Build37)
Map Location 111,947,558 - 111,948,066
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I09.T7 (MSMg01no390_i09.b1)MSMg01-390I09.TJ (MSMg01no390_i09.g1)
ACCAG492514AG492515
length741770
length of high quality
(start - end)
519 (83 - 601)383 (81 - 463)
definitionCHROMAT_FILE: MSMg01no390_i09.b1 PHD_FILE: MSMg01no390_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005CHROMAT_FILE: MSMg01no390_i09.g1 PHD_FILE: MSMg01no390_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGC
GGAATTCTTTCTGTTTACCTAACACCTATCAGTTATCAGTTTTATTCAAA
TATATGAACTTGTGACTGTGTAAAGAAATGAATTTTGTGCAATCTAAAAC
ATTTGTTTTCTGCTCTTATAGCTTTTGAAATTATTGTAAAGTATTCATTT
AAACACAATGTTGTTTGCCTTCATTGAAAATTTACTGTAATCTATTGTGA
CTTACATCTTTTCTAATGGATGTTTACATTAATTTTTATGAGTAATTTAA
CTACATTTTCTAAGTTTCCTAAATCTTTATTATGGGTTTTATAATGAAAA
AAATTATTGACTGACTGTCTATATTTAATGAACTTGAATTTCTTTAATTA
ATATTAAAATACAAGTAGAATTCTAAAATAATATTAATAATACAGTGGTA
TCTAACATAAATGGTGTTTCTTTAATGTGAATAGTTTACAATATACTTCA
AGATCTTTAATTTGCTTAATGACATGATATGGAATCCTGAATGTATAAGT
ATGGTAAAGTATCAAATTAATTTAAAAAATTAAACATTAGTTACTATTAC
TAATCACTACTCCAGTAATTATTGTATAGGAACTTATACAAGCTTGCCTC
CCATGAATTTCCTTTTAATATATGCCTGACTATCATATGCGTGCAAATAC
ATATTGTCATATGTACGCTAAATATGGACCCCCCCCAACTN
NNAACTATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTTCAGTTTTGTTTTAATA
GGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGCATATATT
GGATATTAGCCATATATCAAGTGTAGGGTTGGTAAAGATCTTTCCCCATT
CTGTAGGTGGCTGTTTTGTCCTATTGAAAATGTCCTTTGACTTCCAGAAG
CTTTTCAATTTTGTGAGGTCCCATTTGTCAATTCTTTATCTTAGAACAGG
AACTATTGGTGTTCTGTTTATGAAGTTTTCTTTTGTGCTGATGTGTTAGA
GGCTCTTCCCTATATTCTCTTCTATTAGTTTCATTGCATCTAGTTTTATG
TGGAGGTTCTTGATCCACTTGGAATTAAGCTTTGTGCAAGGAGGTAAGAA
AGGTTCAGTTTGCAGTCTTCTACACGCTGACCACTAGTTGAACCAGAACC
ATTTGTTCGAAATGCTTTTTTTCCACAGGATGGTTTTATTTCCCTTGCCC
AATATGAAGTAACCATAGGACTGTTGGTTCTTTTCCTGGTTCTCCCCCTT
CCGGTCCCCCGGATCCACCTTCCCTTGTTTCTGCCACCTATCACCCTGCC
AATTTTGTTCTCCTACTTGCCCCTGTTTTTCTTTTTTTTGTTGGCCTTTT
GAAGCGCGATTTCCCCCTTGAAGATTTCCTTTCATTTTGTTTCACCCACC
CTCTCCTTTTACTTGGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i09.b1 MSMg01no390_i09.b1 CHROMAT_FILE:
MSMg01no390_i09.b1 PHD_FILE: MSMg01no390_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:28 2005
         (519 letters)



>mm_chr14_111947558_111948475
          Length = 918

 Score =  870 bits (450), Expect = 0.0
 Identities = 495/510 (97%), Gaps = 1/510 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcagttttattcaaatatatgaacttgtgactgtgtaaagaaatgaattttgtgcaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 509 ttatcagttttattcaaatatatgagcttgtgactgtgtaaagaaatgagttttgtgcaa 450

                                                                       
Query: 61  tctaaaacatttgttttctgctcttatagcttttgaaattattgtaaagtattcatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctaaaacatttgttttctgctcttatagcttttgaaattattgtaaagtattcatttaa 390

                                                                       
Query: 121 acacaatgttgtttgccttcattgaaaatttactgtaatctattgtgacttacatctttt 180
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 389 acacaatgttgtttgccttcattgaaaatttactgtaatctgtagtgacttacatctttt 330

                                                                       
Query: 181 ctaatggatgtttacattaatttttatgagtaatttaactacattttctaagtttcctaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctaatggatgattacattaatttttatgagtaatttaactacattttctaagtttcctaa 270

                                                                       
Query: 241 atctttattatgggttttataatgaaaaaaattattgactgactgtctatatttaatgaa 300
           | |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 a-caatagtatgggttttataatgaaaaaaattattgactgactgtctatatttaatgaa 211

                                                                       
Query: 301 cttgaatttctttaattaatattaaaatacaagtagaattctaaaataatattaataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cttgaatttctttaattaatattaaaatacaagtagaattctaaaataatattaataata 151

                                                                       
Query: 361 cagtggtatctaacataaatggtgtttctttaatgtgaatagtttacaatatacttcaag 420
           |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cagtggcatctaacgtaagtggtgtttctttaatgtgaatagtttacaatatacttcaag 91

                                                                       
Query: 421 atctttaatttgcttaatgacatgatatggaatcctgaatgtataagtatggtaaagtat 480
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 90  atctttaatttgcgtaatgacatgatatggaatcttgaatgtataagtatggtaaagtat 31

                                         
Query: 481 caaattaatttaaaaaattaaacattagtt 510
           |||||||||| |||||||||||||||||||
Sbjct: 30  caaattaattaaaaaaattaaacattagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)