BAC Information

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BAC

Clone NameMSMg01-390I14
Chromosome14 (Build37)
Map Location 25,930,585 - 25,930,976
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315, LOC100039411
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I14.T7 (MSMg01no390_i14.b1)MSMg01-390I14.TJ (MSMg01no390_i14.g1)
ACCAG492524AG492525
length749744
length of high quality
(start - end)
190 (137 - 326)399 (78 - 476)
definitionCHROMAT_FILE: MSMg01no390_i14.b1 PHD_FILE: MSMg01no390_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:29 2005CHROMAT_FILE: MSMg01no390_i14.g1 PHD_FILE: MSMg01no390_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTCTATTTGCGGCGGTAATAGAATACCATATTCACAACCCCCCC
GGAATCTCTTCAAGTAACGNACAACACCCATCTCAGNAAAGAAACAGAAA
CTGAAAAGCAAGAAAAATGGATGTTGCACAGAATGCAATAACAAACAAAT
AAAATTTATCTGAATGGACTTAAAAGCAGAGCAAAGATGAAGAAGGGCAG
AAATAATTACGGAGCTAGAGGGCAGATGGACAGAACATACACAATTTGGT
CAACAGGTTATATAGACAAAACTAGGAAGTCTTAGGGACCTAGCTGACCA
TATCAGAAGATATGTCTTACTGATTNCATAGTAATGAACATCTGTAAAGG
CTTACTGATCTAAATTTAGCAGGAGAAACCAGATTCAGGAGGTAGAATCT
CATACAAACCCAAGAAAATCCCCCCACCCAGTACAACACATTTATAGTTC
TGAAAACTACAAAAACCCACCTGAAAGAAACAACACAGAAAGATCGTTCC
CTTCATGTTGACTACTTTATTCTAAAGGCCCAGCTTGAAATGGCCTCATT
GTGAGTAGCATGCCGAGGCTGGGCCGCAGGAGAGAACGAACATTTCCGTA
CTTATATACACCTGAGCACGCCCATGGCCCCACTCCCCCGGACCCTTAAA
GACCCCCCGTGCGCGTTACCCCTAACTCCAACCCCAAACCCGCACTCGAC
CCCCCACAACCCCCCCCCGCTCAGCACCCCCCTTAGCACCCCCCGGTGC
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCTGCTGGGCTCTTGCAG
GCACATGTCACTGTATCTAGCTTTTATATGGGGTCTGAGGCTGAAACTCA
GTCCTTCACACTTGTATGGAGGTTCCTTACAGATTGCTCCATTACACTGG
ACTCCCCTTTCCATTTTAGAGAAATGGATGTAGGCTCGATGAGAAGAGGC
AATGTACTATCGTTCTTACCGGACTCAGGAATTGTTCTGGTTCTAGAGAA
GCGGGCTCCTTCCAGCTTCCAGTTTCCTGCTTCCAGCTTCCCCTCGCACA
AGTGACACTTTTCTTGTATGTTTAGACCCAGCATGATAAAGTGTTTTATT
GTGGAATCATTATGACTTGCCAATCCTAGGAAACTCCCTAAGACTTCTGT
CTCCTCGGTGGTCTGGGAAGATGTTGTTTGCTGAACACAATATAGTACGC
CACTCCCCTTTAGGGTGACGTCACCCCTTGTTGACCTCCATTTTTCGCAT
GATATCCCCAACCATATGAAACCCCTTCACCTCTTCTGCCTTGTCTCCAG
TCTAACTCCGTTGTCAACCTCAGTCTCTTACTTTTTTCCCTATCCAAAAC
CCCCCCTTGTTTTTTTTTTTTTTTCTCTCTCCTTTTCCTCCCATACCCTC
TCTCCTCTTCCTCTCCCCGTCTACTCTTCATCACCACTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i14.g1 MSMg01no390_i14.g1 CHROMAT_FILE:
MSMg01no390_i14.g1 PHD_FILE: MSMg01no390_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:29 2005
         (399 letters)



>mm_chr14_25930520_25931318
          Length = 799

 Score =  702 bits (363), Expect = 0.0
 Identities = 387/399 (96%), Gaps = 7/399 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctctgctgggctcttgcaggcacatgtcactgtatctagcttttatatggggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tcctctctgctgggctcttgcaggcacatgtcactgtatctagcttttatatggggtctg 398

                                                                       
Query: 61  aggctgaaactcagtccttcacacttgtatggaggttccttacagattgctccattacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggctgaaactcagtccttcacacttgtatggaggttccttacagattgctccattacac 338

                                                                       
Query: 121 tggactcccctttccattttagagaaatggatgtaggctcgatgagaagaggcaatgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggactcccctttccattttagagaaatggatgtaggctcgatgagaagaggcaatgtac 278

                                                                       
Query: 181 tatcgttcttaccggactcaggaattgttctggttctagagaagcgggctccttccagct 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taaagttcttaccggactcaggaattgttctggttctagagaagcgggctccttccagct 218

                                                                       
Query: 241 tccagtttcctgcttccagcttcccctcgcacaagtgacacttttcttgtatgtttagac 300
           |||||       ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 217 tccag-------cttccagcttcccctcgcacaagtgacacttttcttggatgtttagac 165

                                                                       
Query: 301 ccagcatgataaagtgttttattgtggaatcattatgacttgccaatcctaggaaactcc 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 164 ccagcatgataaagtgttttattgtggaatcattatgacttggtaatcctaggaaactcc 105

                                                  
Query: 361 ctaagacttctgtctcctcggtggtctgggaagatgttg 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctaagacttctgtctcctcggtggtctgggaagatgttg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)