BAC Information

Click to search

BAC

Clone NameMSMg01-390K20
Chromosome14 (Build37)
Map Location 9,326,410 - 9,326,882
singlet/doubletsinglet
Overlap gene4930452B06Rik
Upstream geneLOC100042286, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005
Downstream geneLOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390K20.T7 (MSMg01no390_k20.b1)MSMg01-390K20.TJ (MSMg01no390_k20.g1)
ACCAG492632AG492633
length755810
length of high quality
(start - end)
490 (65 - 554)33 (764 - 796)
definitionCHROMAT_FILE: MSMg01no390_k20.b1 PHD_FILE: MSMg01no390_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:40 2005CHROMAT_FILE: MSMg01no390_k20.g1 PHD_FILE: MSMg01no390_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGA
TCCGCGGAATTCACTCTATGTACAGCTTATTCAACAATGGAATGCAAGGA
CCATATGCCCATAACAGCAGCCACTTACCAAACAGGCATTGTAATTAATA
TTTGGAACTTCATTAATTTGCAAAGCTTTCATTTGCCTTAGAATGCCAGA
AACAGTGCTTTCCATATTACTGAGCAGTCAGTAAATGCACCAATCTTTCT
TTTACAATGGCCTATTGCATTATGGGACAGATGTGCTACACACATTATTT
TACTTCATAGTCAAAACAATGCAAATGAATAAGCATTGTTGTCCCCCCCC
CAACCCCTTGTCTTCAAATAAGTTAACTGAGGCTGAAGACATAAATAACA
AGTTCAAGGTCTCAAAGGGAAGAATGCCACACAGCCTCTTGCAGGTCTGT
CTGACTTGAGTTAGTGCTCCAGGCCACTGTACCCATGGCTCCTTGACTTA
TCTGCTTAGAAAGAAGGAAATACAGGTAGGCTTGATGGAGGGCTCTGTTT
GGAGAAGCTTGTTGCCAGTTGGCTCCAGGGCAGCATGAAGCCCGTGGGCA
CCTGTGATGGAACTGTCACATGTAGGCAAGTCACCTCCAAGTGAACCCCG
CCCAACAGGGCTAGGGCAGTAAACATGCCCACCTGCCGGGAACCTGATCC
TGGAGCAAGTGCTTACCCCTGAAGCAAACCAGGGCTCCCAAAAACCTTCC
TGTAT
NNNNCCCCAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCGNCCAAAACCTTTTTAAAGGAGATTTA
TTTTCGCGCGCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCGTCGT
CGCGCNGNNNNNNNCNNNNCNCCCCCCCCCCCCCCCCCCCGCCCCCGCCC
GCNCCCCCCCCCCCCCCCGCCCGCCCCCCCCCCCCCCCCCCGCCCCCCCC
CCCGCCCCCCGCCCCCGTTCCTCCCCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTTCTCCCCCCCCCCCCC
CCCCCCCGCCCCNGCCCCTCCCCCCCCCCCCCCCCCCCCCAGCCCGCCCC
CCCCCTCCCCCTCCCCCCGCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCC
CCTCCCCCCCTCTNCCCCCCCCCCCCCCCCCCTCCCCTCCCCCCCTCCCC
CCCCCCCCCCCTCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCCCCCCC
CCCCCTCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTTCCCCCCCCC
CCCCCCCCCTCTCCCCTCCCCCCCCTCCTTTCCGCCCCCCCCCCCCCGCC
CCCTGCTCCCCCCCCCCTCCCGCCCCCCGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCAACTCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCTCC
CCCTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_k20.b1 MSMg01no390_k20.b1 CHROMAT_FILE:
MSMg01no390_k20.b1 PHD_FILE: MSMg01no390_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:40 2005
         (490 letters)



>mm_chr14_9326210_9327099
          Length = 890

 Score =  820 bits (424), Expect = 0.0
 Identities = 462/476 (97%), Gaps = 3/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgtacagcttattcaacaatggaatgcaaggaccatatgcccataacagcagccac 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatgtagagcttattcaacaatggaatgcaaggaccatatgcccataacagcagccac 260

                                                                       
Query: 61  ttaccaaacaggcattgtaattaatatttggaacttcattaatttgcaaagctttcattt 120
           |||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttactaaacagtcattgtaattaatatttggaacttcattaacttgcaaagctttcattt 320

                                                                       
Query: 121 gccttagaatgccagaaacagtgctttccatattactgagcagtcagtaaatgcaccaat 180
           ||||||||||||||| ||||||| |||||||||||||||  |||||||||||||||||||
Sbjct: 321 gccttagaatgccaggaacagtggtttccatattactgaaaagtcagtaaatgcaccaat 380

                                                                       
Query: 181 ctttcttttacaatggcctattgcattatgggacagatgtgctacacacattattttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcttttacaatggcctattgcattatgggacagatgtgctacacacattattttact 440

                                                                       
Query: 241 tcatagtcaaaacaatgcaaatgaataagcattgttgtcccccccccaaccccttgtctt 300
           |||||||||||||||||||||||||||||||||||   | ||||||||||||||||||| 
Sbjct: 441 tcatagtcaaaacaatgcaaatgaataagcattgt---ctcccccccaaccccttgtctc 497

                                                                       
Query: 301 caaataagttaactgaggctgaagacataaataacaagttcaaggtctcaaagggaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 498 caaataagttaactgaggctgaagacataaataacaagttcaaggcctcaaagggaagaa 557

                                                                       
Query: 361 tgccacacagcctcttgcaggtctgtctgacttgagttagtgctccaggccactgtaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgccacacagcctcttgcaggtctgtctgacttgagttagtgctccaggccactgtaccc 617

                                                                   
Query: 421 atggctccttgacttatctgcttagaaagaaggaaatacaggtaggcttgatggag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atggctccttgacttatctgcttagaaagaaggaaatacaggtaggcttgatggag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)