BAC Information

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BAC

Clone NameMSMg01-391A03
Chromosome14 (Build37)
Map Location 85,326,402 - 85,326,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A03.T7 (MSMg01no391_a03.b1)MSMg01-391A03.TJ (MSMg01no391_a03.g1)
ACCAG492884AG492885
length754749
length of high quality
(start - end)
455 (35 - 489)463 (81 - 543)
definitionCHROMAT_FILE: MSMg01no391_a03.b1 PHD_FILE: MSMg01no391_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:05 2005CHROMAT_FILE: MSMg01no391_a03.g1 PHD_FILE: MSMg01no391_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGAC
ACCCAGGGCTACACAGAGAAACCATATATATATTTTTTTTTCCTACAAAA
CTCTGAAGTTGTTGTTGTTATTATTATTATTGTTATTTGTTAAGTAACAT
TTAAGAAAAAGTGTCATGGCGCATGTTATATGTAACTCAAGCACTCTGAA
TCTAAGACAAAAGGATTACCAGATGAAAATTGGCCAGTACTACATAGTAA
GTTCAAGGCTACTGCGTGCATTGTAGATATTATTACATTTACCTAATTAA
AATTAGAAGTTAGCAGAATGATATGATGACTTTTAAATATAGTACAATAC
TACAAAGATATTTTTCCCCGTGGTTAGTTTTTTTGGGAGGAATTTGTGTA
ACGTATTTTGATTATATTCATCCCCCCAAACAGCTCTTAGATTTATCCCT
TCTTCCCTATACTGTCAATTTTGCACATTAATTATTTACAAACATCGTTT
CCAATTTGTGCTGCCCATATGCCCTGGGTGATGCGCTTCCTGATTTATAC
CATGCAAGTAAGTCTCTTCGCCCCCTGGCCCCCTTGCTCGGACAAACCGC
ATTCCCTCTGCGATGCGCCTTCCCTCCCCCCCTCCAAGTTTCCCTTCCAT
CCCCCATTCGCGCCCCCCCGCCCCCACCCCCCCCCCACCATCCCCGCCCC
CCCCGTGTCTCCCACCCCACCTCCTCCACCTCCGTCTTACCCACCCTTTC
CCCC
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTT
ATCACGAAGGGTGTTGAATTTTGTTAAATGTTTTTCAGCATCTAATGAGA
TGATAGTATTTTTTTTCTTTGAGTTTGTTTATATAACGGATTACATTGAT
GTGATTCCGTATATTGAACCATCCCTGCATCTCTGGGATGAAGCCTACTT
GATCATGATGGATGATCATTTTAATGTGTTATTGGATTCAGTTTGCAAAA
ATTTTGTTGAGTATGTTTACATGGATATTCATAACAGAAATTGGTCTGAA
ATTCTCTTTCATTGTTGGGTTTATGTGTGGTTTAGTTATCAGAGTAATTG
TAGCTTCATAGATTGAATTGAGTAGAGTTCCTTCTGTTTCTATTTTGTGG
AATAGTTTGAGGAATATTGGCATTAGGTCTTCTTTGAAGGACTGATAGAA
CTTTGCACTAAACCCATCTGGTCTTAGGCTTTTTTTTTTTTCTCGGTTGG
GAGAATTTCCATAACTGCTTCTACTTACGAGTCATGACACTGCTTACATC
ATCCATCTCAACCCCATTTAATTTTCGTCATCTGCATCCGCCCAGAAAAT
GGGCATTTTCTTCCCAATCTCTACTCTTCACTGAGAACCCCCCTCCTCAG
CCATCACTTCCCCCCCTTTGGCCTTTCCCCCCCTCCTCGCCTTCATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a03.b1 MSMg01no391_a03.b1 CHROMAT_FILE:
MSMg01no391_a03.b1 PHD_FILE: MSMg01no391_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:05 2005
         (455 letters)



>mm_chr14_85326196_85327049
          Length = 854

 Score =  830 bits (429), Expect = 0.0
 Identities = 445/451 (98%), Gaps = 3/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacacccagggctacacagagaaaccatatatatatttttttttcctacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 207 gaattccaggacacccagggctacacagagaaaccatatatata--tttttttcctacaa 264

                                                                       
Query: 65  aactctgaagttgttgttgttattattattattgttatttgttaagtaacatttaagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactctgaagttgttgttgttattattattattgttatttgttaagtaacatttaagaaa 324

                                                                       
Query: 125 aagtgtcatggcgcatgttatatgtaactcaagcactctgaatctaagacaaaaggatta 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtgtcatggcacatgttatatgtaactcaagcactctgaatctaagacaaaaggatta 384

                                                                       
Query: 185 ccagatgaaaattggccagtactacatagtaagttcaaggctactgcgtgcattgtagat 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 ccagatgaaaattggccagtactacatagtaaattcaaggctactgcgtgcattgtagat 444

                                                                       
Query: 245 attattacatttacctaattaaaattagaagttagcagaatgatatgatgacttttaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attattacatttacctaattaaaattagaagttagcagaatgatatgatgacttttaaat 504

                                                                       
Query: 305 atagtacaatactacaaagatatttttccccgtggttagtttttttgggaggaatttgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 atagtacaatactacaaagatatttttccccgtggttagtttttt-gggaggaatttgtg 563

                                                                       
Query: 365 taacgtattttgattatattcatccccccaaacagctcttagatttatcccttcttccct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 taacgtattttgattatattcatccccccaaacagctcttagatttatcccttctcccct 623

                                          
Query: 425 atactgtcaattttgcacattaattatttac 455
           |||||||||||||||||||||||||||||||
Sbjct: 624 atactgtcaattttgcacattaattatttac 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space:   375580
Effective search space used:   375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)