BAC Information

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BAC

Clone NameMSMg01-391D16
Chromosome14 (Build37)
Map Location 119,143,090 - 119,143,310
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D16.T7 (MSMg01no391_d16.b1)MSMg01-391D16.TJ (MSMg01no391_d16.g1)
ACCAG493052AG493053
length754776
length of high quality
(start - end)
559 (36 - 594)221 (81 - 301)
definitionCHROMAT_FILE: MSMg01no391_d16.b1 PHD_FILE: MSMg01no391_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:22 2005CHROMAT_FILE: MSMg01no391_d16.g1 PHD_FILE: MSMg01no391_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAA
ATTATATGAGTGATTATTAAGCTCTTTTATAGTGGGACTACTATTAGGTC
CTTTTCTGATAGTCAACGTTGCAATGAGAACTCTGCCAGTCTCCCGTGTG
TCACCAGTTAATTTTTCCTAGATGGTAACCAGACTTTCTTCTACTCTGAG
CACATTCCAAGACGTTGTAAAACAACTAACCAAAGGTCATAAAAAGCAAA
CTAATGATTTATTATAGGTGCTAGGACAGAATATAAAATATTGACTGGGT
TCATTTATACAAAACTTCACTAATAACTTAGTTATGGTTTTAAACCTCCT
GTGAACCTGTGGATCTGTGACAGGTGATGGATGTTTAGCCAGATAATTAC
TCCTAATGGATATGTGTGTAAACATTCTCTGTTGTAAACTACTAACTATT
TCAGTTTATGATTTGATTTTATGTGTGAACCTGCGATGAACTTTTCAACA
CGTGATCATGTATTCTGAAAGATGTTTTCAGTGCTGAGGACAAAGAGAGG
AACTGAGCTGAGAGGAACTGAGCTGAGGAGAACTTTTTGGGACAGAACAC
GTCTTAAACAAAAAGCTAGGAAGGATTTTTCCCCTTCCCCCCCTTAGATC
TTTCTGCGTTCCCCCCTAAAAATTTTTCCTAGGAAACTTTTTATTACACT
ACCAAACCCACTACCCCTTTTCCTGAGAGGCCCCTTTTCTTCCGGGACCT
CCCN
NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTCAGGCATTTCCTGAG
GGTGGATGAGAGTGGGTGAGGTTTCTGGAGCCCAAGGGGCGATATTCCCA
TAGAAGCAACCCTTTCATGCATTTCCTTCTGCAGCGTTGGTACCCAAACC
CAAGGCCCTGAGCGTTTGAGGCAAACAGTCTACTGAGTCCGTGAAGGGAT
TTTTTCAGCCCGTGAGCTAATTTTTGTTGGGTCTGAGGTTGTTGCTCCAG
TTGTACTGCATGTACTGTATTCTCCTTTCCATGCCTGCAAAGATTTTTAC
GCAGTCTTTGTTGTTTATCACCTCTCTGAGAAAAGACCTGAGGATGCCTG
CCTTCATTGTCTTTATACCCCCACTACATGACTCTAACTCTGAACACAAG
CTCCCTAGTTTGCACCCTCAGTCACTGCCTCTCCACCATTACTCGTCTCT
CTCTCAAGCATGCTCCTAGCTTCCCGCGCCCCCCCCACCACCTTTATATG
TCCCCTAATTCTCACCCTTCTTCCCTTTTTACTTCATCCCCCCCCCTCAT
ATCACCTCCTTGCTCCCCTTTTCCTCCCCCCCCTCCTTCCTTACTCCCCC
TTTCTGTCACCCTATTTTTTTTTCCTTATTTCACCCCCCCCTTCCCCTTT
CCCTTTCTCTCCTATCCCCCACCATTCCCTCTCCCAACATTCAGCTTTCT
TTCTTATCTTCCCCTCTCCCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d16.g1 MSMg01no391_d16.g1 CHROMAT_FILE:
MSMg01no391_d16.g1 PHD_FILE: MSMg01no391_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:22 2005
         (221 letters)



>mm_chr14_119142890_119143510
          Length = 621

 Score =  366 bits (189), Expect = e-106
 Identities = 213/225 (94%), Gaps = 8/225 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctcaggcatttcctgagggtggatgagagtgggtgaggtttctggagcccaaggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcctcaggcatttcctgagggtggatgagagtgggtgaggtttctggagcccaaggggc 362

                                                                       
Query: 61  gatattcccatagaagcaaccctttcatgcatttccttctgcagcgttggtacccaaacc 120
           |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 361 gatattcccacagaagcaaccctttcatgcatttacttctgcagcgttgggacccaaacc 302

                                                                       
Query: 121 caaggccctgagcgtttgaggcaaacagtctactgagtccgtgaagggatttttt----c 176
           ||||||||||||| |||||||||||||||||||||||||||||||||||    ||    |
Sbjct: 301 caaggccctgagcatttgaggcaaacagtctactgagtccgtgaaggga----ttccacc 246

                                                        
Query: 177 agcccgtgagctaatttttgttgggtctgaggttgttgctccagt 221
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agcccgtgagctaatttttgttgggtctgaggttgttgctccagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)