BAC Information

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BAC

Clone NameMSMg01-391E13
Chromosome14 (Build37)
Map Location 115,267,186 - 115,267,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E13.T7 (MSMg01no391_e13.b1)MSMg01-391E13.TJ (MSMg01no391_e13.g1)
ACCAG493094AG493095
length770782
length of high quality
(start - end)
336 (61 - 396)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no391_e13.b1 PHD_FILE: MSMg01no391_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:26 2005CHROMAT_FILE: MSMg01no391_e13.g1 PHD_FILE: MSMg01no391_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGCCGCTAAACGACTCCTATATTCACAGCATCCGCGGAATTCTTCAGCTT
TCGCCACTAATAAGGAGATTTACATTTATGGCAACTTGACATAAAAATGA
ACTATGACAAATCCCTACATGTTAGTGTCCACGGTTTACCTGGAAACTGT
GGATATGGACTCTACAGGGGAGAGTCACCACAACTATTATTTATTTGCAA
ATCTAGTAGCTTGGTTTAATAGATATTCATACATTCGGTAGGATATTTTA
AATGTGTCTTTCACAATTCCTTTATTTTTACCTCTGTTAGCAGTATTGAC
TAGAGTTTTTTTGTATGTCCACAGCTATAGCCCCGGCTGTCATTGTTTCT
GATGCACAGTTATTCCAAGGGCCCTAAAGGAAGTAGACTTTACCGTTGAA
CATCACAGAACTTGATGATAGAAATCAGCACCGGAGTACATCTGAAGGCA
TGAAAGGGAATAGCCAATAGAGTCCGACAGAAAAGAATTGACCTCACATT
TTCTGAAATAAACGGAATCTGTGATGTATAAAAGCGCCATGGCTGCTTGT
CTGTGAACCATCCCCAGGTTAAACCTAGGGGGGGAAGGAAAAGTGTGGCT
TTTTCCCATCTAGGTGGAAGAAGCTTTACCGCCCTGGGAGTCCCTTCCAC
TTCCCCCCCACCTGGCCTTGGTAAACAGGTCCCCGGGTCCCCCCCCCTGC
ATTGGGGGTTGGAAAGCCGCCCCCTTCCCTCCCCGCCCCCCTTTGGCAGC
CCCCCTCGCCCCAAATCTCA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCCGCGCCATTCCTCCTATATAACAATTAAATTACA
CATGTTTATGAATTAATTTCCAGGAGTCAAGATGGCTCAGTGTGTAAAGT
TTTGCACCACCAGGCCTGAAGACCTGAGTTAAATTCCTACATGGTAGAAG
AAGAAAACAAATTTCTCCCTAACCTTCAGACACATGTTATGGGTACACAA
ACTTACACACACACACACACACACACACACACACACACACACACACACAC
AATTACCAAGTACAAAAGCTTTATCATTAATTTATATTCTGTTACGGTTT
TAGATATAAAAGAAAATAAAGAGACATATAGTGGATCTAAATGAAAGTGT
TCTGTAACATCTAATAAAATAAGGCTCAGTGTATATTTTCAGATTATTTC
ACTACATCAAATTTGCCACAGCATCTACCATCAAACTTCTACTTCATTGG
GAAAATCATTTTTACACTCCAGAAGACCACATCTTTAAAAAAAACCAATT
GACCGACCCACCGATCGAGAGAGAGAGACAGAGATCCCTGAAGAACCACT
TCCTCTGCACCCATGGAATCGAACTATCGCCCTCGCCTCCGATCTGACAG
ACTTTCCTTTTTTGACCAATTAGGTATCCCCCCTCTTGGCCCACCTGGCA
ACCCCCCGGCTTTTCCGACTACCGCGATTCTTCCTTATCGCCCCCCCCAA
GACCCCTCCTCCCCCTCTCCCCTCTCACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e13.b1 MSMg01no391_e13.b1 CHROMAT_FILE:
MSMg01no391_e13.b1 PHD_FILE: MSMg01no391_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:26 2005
         (336 letters)



>mm_chr14_115266986_115267721
          Length = 736

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggagatttacatttatggcaacttgacataaaaatgaactatgacaaatccctacat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 taaggagatttacatttatggcaacttgacataaaaatgaactatcacaaatccctacat 330

                                                                       
Query: 61  gttagtgtccacggtttacctggaaactgtggatatggactctacaggggagagtcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gttagtgtccacggtttacctggaaactgtggatatggactctacaggggagagtcacca 270

                                                                       
Query: 121 caactattatttatttgcaaatctagtagcttggtttaatagatattcatacattcggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caactattatttatttgcaaatctagtagcttggtttaatagatattcatacattcggta 210

                    
Query: 181 ggatatttt 189
           |||||||||
Sbjct: 209 ggatatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)