BAC Information

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BAC

Clone NameMSMg01-392A03
Chromosome14 (Build37)
Map Location 70,607,429 - 70,607,925
singlet/doubletsinglet
Overlap geneSorbs3
Upstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2
Downstream genePpp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A03.T7 (MSMg01no392_a03.b1)MSMg01-392A03.TJ (MSMg01no392_a03.g1)
ACCAG493645AG493646
length754847
length of high quality
(start - end)
496 (54 - 549)95 (72 - 166)
definitionCHROMAT_FILE: MSMg01no392_a03.b1 PHD_FILE: MSMg01no392_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:24 2005CHROMAT_FILE: MSMg01no392_a03.g1 PHD_FILE: MSMg01no392_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATAATTTGCGCGCGCTAATACCACTCACTATTTCCAGAGGATCCG
CGGAATTCTTGCTATATTTTTCTCCCTAATCTTCTTAAAAGAGGAAGAAT
TCTCCCTAAATCTGGGCAGAAAAGAGGGCAGGAGATTATTTAAGTTTCCT
TGGACTTACCTGCCCTGCGGTCCTAGCGCCTCGTGCCTCCGTGTTTTGTA
AAGCCATCCATCCGAATACTTGTGAACACAGTGAGCTCCAACCTGAGAGG
TGGCGAGCCAGCCCCGGCCTGACTGGCAAAGCAGAGCTGCAGCAGTTCAG
CCCTCCATTGCCACCCTCCCCGTTCCTCCCAACCTGCATCCTCCAAGACT
GTTTACTAGACTCCCCATCCCCATAGAGATGGGACTGGTAGCCAGTCCTC
AGCTCCCTTGCCCACACTGTGCCTTGTGAGAAACAGGAAGTTGGGACCTT
CGGCAGCTCAGCGGCACCCTCTACAATAAATATTTATCTTGGAGTCCAGG
TCAGAGCCTTAGAACCTAACAAGTTCACTGCTGGTGAAGGGGGATGGCCA
GGATTCTTGGAGTGCCAAGATCTTCAGCTTCGTCTTTGAACAACCCACAA
GACAATGAAAGTGATGTAGCCCTTCTTAGTCCCAAGGACCCTAACAGGTG
GGAAAACTTTAAAGAGGCACATGGGTAGCACTTTTAATCCCCTGGGCCAG
GGGCAGGCTGCTTCTCTGGAAAGGGGGCATAATCAGCGGCACACAACCTC
TCTC
TACAGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGGATATCTGCCCAGAAGTAAAATAGG
TAGCAGTTTTTTTATTTTTAGATTTGGGGAGGGGGAAATCTCCAAGCTAA
TTTTCATAATGACTGTATTAGTTTGTGTCCCCACCAAAACGACATTGTTT
TGAGGTATGGTCCCTTGTGAGGCATGGTACACTGTGCCCTGTACTATACC
TAGCTGACCCTTGAGCTTCCCAGGAGACTTTCCTGTGTCTGCCTATCATC
TTGTCATAGGAGTATCTTTTTTTTAACATCTGCCTCTGAGGTTTTACATC
GTCTTGCCTCCTCCGCCTCCGCTTTCCCCGGGGCGGTGCATTTTCTCCTC
TCCTCTTTTTTCTCCCTTCTTTCCCTCCCCCCTTTCCCTACCGCTACCCC
CTATCTCTTCTCCTCCCTCCTTCTTCCTTTCCCCTTTTCCCCTCTTTCCC
ACTTCCCTCCCTTTTTCCCTTCTCCCCCTCCTTCCCCTCTTTCCTTTTTT
TTCTTCCCCTTTTTTTTTCCTCCCCCCTTTCCCCTTCCCTTTACCGTATT
TTTTCCCTCTCCACTCCTTCTTTCTTTTCTTCCCCCTTTCTTTCTTCTTT
TTTTCCCCCTCCTTTCCTTCCCTTCCTCTCCCCCGCTGTTTTTCTTTCCT
CTCCTTCCACTCCCACTATTCTCTCTGTTCTTCTCTCCCTCTTTATATCT
TTCCCTCCCCCCCCCCTTATTCTAATTTCTATACCCCTCCTTTCACATTT
CCCCCCCCCCCTCCTCCCTCTTTCTCCTCCTTATTGTTTTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a03.b1 MSMg01no392_a03.b1 CHROMAT_FILE:
MSMg01no392_a03.b1 PHD_FILE: MSMg01no392_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:24 2005
         (496 letters)



>mm_chr14_70607229_70608125
          Length = 897

 Score =  880 bits (455), Expect = 0.0
 Identities = 486/501 (97%), Gaps = 9/501 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttgctatatttttctccctaatcttcttaaaagaggaagaattctccctaaatct 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aattcttgctacatttttctccctaatcttcttaaaagaggaagaattctccctaaatct 638

                                                                       
Query: 61  gggcagaaaagagggcaggagattatttaagtttccttggacttacctgccctgcggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gggcagaaaagagggcaggagattatttaagtttccttggacttacctgccctgcggtcc 578

                                                                       
Query: 121 tagcgcctcgtgcctccgtgttttgtaaagccatccatccgaatacttgtgaacacagtg 180
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 577 tagcgcctcgtgcctccgtgttttgtaaag----ccatccgaatacttgtgaacacagtg 522

                                                                       
Query: 181 agctccaacctgagaggtggcgagccagccccggcctgactggcaaagcagagctgcagc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 agctccaacctgagaggtggcgagccagccccggcctgactgacaaagcagagctgcagc 462

                                                                       
Query: 241 agttcagccctccattgccaccctccccgttcctcccaacctgcatcctccaagactgtt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 461 agttcagccctccattgccaccctccccgttcctcccaacctacatcctccaagactgtt 402

                                                                       
Query: 301 tactagactccccatccccatagagatgggactggtagccagtcctcagctcccttgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tactagactccccatccccatagagatgggactggtagccagtcctcagctcccttgccc 342

                                                                       
Query: 361 acactgtgc-----cttgtgagaaacaggaagttgggaccttcggcagctcagcggcacc 415
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acactgtgccttctcttgtgagaaacaggaagttgggaccttcggcagctcagcggcacc 282

                                                                       
Query: 416 ctctacaataaatatttatcttggagtccaggtcagagccttagaacctaacaagttcac 475
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 281 ctctacattaaatatttatcttggagtccaggtcagagccttagagcctaagaagttcac 222

                                
Query: 476 tgctggtgaagggggatggcc 496
           |||||||||||||||||||||
Sbjct: 221 tgctggtgaagggggatggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space:   431082
Effective search space used:   431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)