BAC Information

Click to search

BAC

Clone NameMSMg01-392B14
Chromosome14 (Build37)
Map Location 77,603,648 - 77,603,897
singlet/doubletsinglet
Overlap geneD230005D02Rik
Upstream geneLOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
Downstream geneLOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B14.T7 (MSMg01no392_b14.b1)MSMg01-392B14.TJ (MSMg01no392_b14.g1)
ACCAG493715AG493716
length777767
length of high quality
(start - end)
467 (73 - 539)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no392_b14.b1 PHD_FILE: MSMg01no392_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:31 2005CHROMAT_FILE: MSMg01no392_b14.g1 PHD_FILE: MSMg01no392_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTTACGAATCTCTAATGGCCAAGAAGCACCTAAAAACTTT
GTCATCAGGGAAATACAAATCAAAATGACCCTGAGATTCCACCTTACACC
AAACAGAATGGCTAAGATAAAAAACTCAGAGAACAGCAGATGCTGGTGAG
GATGTGGAGAAAAAATACTCCTCCATTTCTGGTGGGATTGCAAGCTGGTA
CAACCACTTTGGAAATTGGGAATAGTTCTACTGAAGACCCAGCTATACCA
CTCCTAGGCATATACCCAAATGATATTCCAACATATAAAAAGTACTCATG
TTCCATTATGTTCATAGCAGCCTTACTTATAAAATATAATATTGTCAGTT
TGACTACATCTGGAATAGACTACAATTCAGAAATGCAGGGAACACCTTTG
AGCTAGATCTTGAGGCTAGAAGATACAGACTTCTGACCTGGATCTGGACA
TGGAGATCTTGAGGTTTAGTGGCCATGAAAACATCTTAGGCCTAGGTGAG
GTAGTCTGTGCCTTTAATCCCCAGAGACTGAGACCAATAGAACTCTGAGT
TCAAGGCCAGCCTGGAAGAGCAAGGTCCAGATCCCGGCATGGTGGGAATT
CCCTTTAATCTGGGCCATGACTTCTGCTAGAAACTTACCTAGGGACATTG
GAAAGAAGGAAGAACCCCCCTTCTTTGGCTGTTTGCCCTTACCTTGCCGC
CACACCGGTTGGAACCCACCTCCCTCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTTTACATAAAAAAAAACCGTAGGTGG
CTGATTGGATAGTGACTTTTTCAATACATATATTTTAATAACAGCATAAA
AAATGGAGCTAATTACATGAGAATCCAGTTATAGAGGCTTAAATTGTTGA
TATGTCAATTTCAAATAGTAGTCTTTGGTAATAAGGATTTGAGGTCGCAT
CCTTATGAATAAACTAAGTGGGATAACCACGTGTTCAGTATCATTGTGTC
CTTAGTCACAGGGAGCGTGGTATTACGAGTCTTAAAGTCTGCGAGTCACA
TAGCAGAGGTGCGTCCCCAAGTTCACCCTTGTCCATCTCCAGATTTCAGG
CAGCGCTGTCCTGTGGCTGTGTGAGGCTGCATAAGACCAGCTGAAAATGT
GCATTTTGGAGTCTGCCCAGGAGATCCATCTGCAAGGGGCATCAAGTGCG
CCCGGCAGTGTTACTAGCCTTTAAAATCATCTTCCGATTACCAATGGCTC
CCCGCAATGTTTTGAAGCGACCTCTGATGCCGCTGCTATCCATTTTAACT
TTCTCCCCCCCCCCCTTCCCCGCGTGGCCTAAACTCGTCCTTTATTCCTC
TCCTGGGAAACCCCCATGACCTCATGTTCCTCGCCCCCCCTAACACTATC
TCCCCCCTGCGTTCCACCCCCTTTTTCTTCCCTTCCCTCTCTCCCATCCC
TTCCCTTTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b14.g1 MSMg01no392_b14.g1 CHROMAT_FILE:
MSMg01no392_b14.g1 PHD_FILE: MSMg01no392_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:31 2005
         (249 letters)



>mm_chr14_77603448_77604097
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%), Gaps = 1/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttacataaaaaaaaa-ccgtaggtggctgattggatagtgactttttcaatacata 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttacataaaaaaaaaaccgtaggtggctgattggatagtgactttttcaatacata 260

                                                                       
Query: 60  tattttaataacagcataaaaaatggagctaattacatgagaatccagttatagaggctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttaataacagcataaaaaatggagctaattacatgagaatccagttatagaggctt 320

                                                                       
Query: 120 aaattgttgatatgtcaatttcaaatagtagtctttggtaataaggatttgaggtcgcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgttgatatgtcaatttcaaatagtagtctttggtaataaggatttgaggtcgcat 380

                                                                       
Query: 180 ccttatgaataaactaagtgggataaccacgtgttcagtatcattgtgtccttagtcaca 239
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccttatgaataaactaagtgggataaccacatgttcagtatcattgtgtccttagtcaca 440

                     
Query: 240 gggagcgtgg 249
           ||||||||||
Sbjct: 441 gggagcgtgg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)