BAC Information

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BAC

Clone NameMSMg01-392H14
Chromosome14 (Build37)
Map Location 19,219,860 - 19,220,265
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H14.T7 (MSMg01no392_h14.b1)MSMg01-392H14.TJ (MSMg01no392_h14.g1)
ACCAG494000AG494001
length780794
length of high quality
(start - end)
406 (73 - 478)180 (99 - 278)
definitionCHROMAT_FILE: MSMg01no392_h14.b1 PHD_FILE: MSMg01no392_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:00 2005CHROMAT_FILE: MSMg01no392_h14.g1 PHD_FILE: MSMg01no392_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCCACACAGGATCCGCG
GAATTCCGCCTTCCCCACATCAGTTAAACACAGCAGGCTATGGTATGTCT
TCAAGTTAGAGACTGAGATGTGATCAGGCCATGCATCCTCACACAGGTCC
TGCACAGTCGGTTGGGCAGGGGACCATCACTTTGCCATTTGGTGGTAGTG
TGCACACAAGCATATTGGTGGCAGTGTGCACACATTCACAAGCCTGTTCC
CTTCACTTGTCACTTGCCTTCCCACAACCTCCTGAAAGGAGCAGAGCCAC
CCTGTGGATTTGATCTTTTTTCCACCCTGCTGCCTCACTTCCTGTCAAGT
CCTTGGTCATGGTGCTTGTGACTGTCCCTTTCTTCTTCCCTACCCACACC
CTGTCCTCTTTACCTCATACTTACGCGGGTAATTTCCAGAGACTAAACTG
GTCTATTTATCCTCTTCCTTCCTGACCAGCCTTCATCCTAGCACATATGA
CTCAATGCTGATATCCAACGTCTTGCCTGGCTTCCCGCCAAGACAAAAGC
CAAAGGTGCCTCGGAAGCCCAGGCCCTGCCTGCCCCACCTGACCCCAATC
CTCCTGTATGCCCTGCTCCCTGCGAAGCTCCCCAAAATTAGTACCCCTCT
TCTTTATGTCACGGCCCCCAATTGGTCCCCACCCACGGCAATACCCGACC
CTTGCCCCTGGCCCGAATCACCCCCCCTTCAACTCCCCCGCCCGCTTTCC
TTTTTTCCTTCTCCCTCCTCCCCCCTCCCA
GCTATTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGAAATCAATAGAAAATGCAGGAAT
GGTGATGGCTGAAGAGATAGCTCAACGATTATGAATATTTTCAGAAGACC
AGGGTTTAGTTCCCAGCACCCATGTGATAGCTAACAACAGCATGGAACTC
AGTCCCACCTAATCAGGTCTCCAAGAACACCTACACACATGGTTCACATA
TATTCTTCCAGGCTCACACACATACACATACATTTAAAAAGCAAGTAAGT
AAATAAATCTTTTCCACATTTTTTATGATAAGAGAAAGAAATGTACGAGA
CTGGAGCGATGACTGACCGACCAATAACACCGACTGCTCTTCCGGAGGCC
CCGAGTTTCCCTCCCAGCACCTATACGGCAGCTCATAACCATCTGCACCC
AGGATCTGATGCCCTCTTCTGGATCGCCTGTATACCGCTTCCGCGTTTCC
CTCTATTAACTTTCATACCTCTCCTTTCCCCCTTCCCCTCTATGATTTCC
CCTCCATCCTTCCTTCTTCTCCCCCCCCCGTCTTGTCCCCCATTTCTTCC
GTCCCCTCTCTCCCCTTTCTTTTTTTTCTACTTCTCCGCTTTTCTCCCCG
CCTCTTTGCCCTTCCCCCCCGTATTTCTCATCCGCTTCCTTATCCCCCCT
CCCCCCCCCCTCTTCTCTTCCCCCCTTCCCTCCTCCCCCCTCTATTTTTC
CCCTTCCGCACTCCTCCCTTTCCCTTTCTCTTTTCTCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h14.b1 MSMg01no392_h14.b1 CHROMAT_FILE:
MSMg01no392_h14.b1 PHD_FILE: MSMg01no392_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:00 2005
         (406 letters)



>mm_chr14_19219660_19220465
          Length = 806

 Score =  731 bits (378), Expect = 0.0
 Identities = 399/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaaacacagcaggctatggtatgtcttcaagttagagactgagatgtgatcaggccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gttaaacacagcaggctatggtatgtcttcaagttagagactgagatgtgatcaggccat 547

                                                                       
Query: 61  gcatcctcacacaggtcctgcacagtcggttgggcaggggaccatcactttgccatttgg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcgtcctcacacaggtcctgcacagtcggttgggcaggggaccatcactttgccatttgg 487

                                                                       
Query: 121 tggtagtgtgcacacaagcatattggtggcagtgtgcacacattcacaagcctgttccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggtagtgtgcacacaagcatattggtggcagtgtgcacacattcacaagcctgttccct 427

                                                                       
Query: 181 tcacttgtcacttgccttcccacaacctcctgaaaggagcagagccaccctgtggatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcacttgtcacttgccttcccacaacctcctgaaaggagcagagccaccctgtggatttg 367

                                                                       
Query: 241 atcttttttccaccctgctgcctcacttcctgtcaagtccttggtcatggtgcttgtgac 300
           |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atctctcccccaccctgctgcctcacttcctgtcaagtccttggtcatggtgcttgtgac 307

                                                                       
Query: 301 tgtccctttcttcttccctacccacaccctgtcctctttacctcatacttacgcgggtaa 360
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 306 tgtccctttcttcttccctacccacaccctgtcctctttagctcatacttacgcaggtaa 247

                                                         
Query: 361 tttccagagactaaactggtctatttatcctcttccttcctgacca 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttccagagactaaactggtctatttatcctcttccttcctgacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)