BAC Information

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BAC

Clone NameMSMg01-392L13
Chromosome14 (Build37)
Map Location 52,496,784 - 52,497,125
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6
Downstream geneMett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392L13.T7 (MSMg01no392_l13.b1)MSMg01-392L13.TJ (MSMg01no392_l13.g1)
ACCAG494189AG494190
length754766
length of high quality
(start - end)		467 (72 - 538)342 (71 - 412)
definitionCHROMAT_FILE: MSMg01no392_l13.b1 PHD_FILE: MSMg01no392_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:20 2005CHROMAT_FILE: MSMg01no392_l13.g1 PHD_FILE: MSMg01no392_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATTTGAGGAATACTGAATGGCTGAGAAACACCTGAAAA
AATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAACCCTG
AGATTCTATCTCACACCAGTCAGAATGGCTAAAATAAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGGAATCAGTCTGGCAGTTC
CTCAGAAAATTGGACATGGTACTACTGGAGGATCCCGCAATACCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAACATGCATGC
TCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATCT
ATACAATGGAGTACTACTCAGCTATTANAAGAATGAATTTATGAAACTCC
TAGGCCAATGGTTGGACCTGGAGGGCATTATCCTGAGCGAGATAACCCAC
TCACCAAAGAACTCCCATGATATGTACTCCCTGATAAGCGGATATTACCC
CACAAATTTAGGATACCCCCGACAACAGTTACATTTGTGCAACCACAGGA
ACCCCCGAACAACCGAAACCCAAGTGGGGAACACTTTGCCCCCTCCTAAA
TTGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACTGGAGGGTAGAGGCAGCTGTGGGGAA
TCATGGAGCTGTGGTCCTGAGAAGAGTGGGCAGACAGCAGGCGGGACTGG
ATAAGGGGCCCGAGAGAGCAGTTAGAGGGTAGAGTTAGGCAGTCTATCTG
CTCCCTCCCCAATTCCTTTTCTCTTTTCCTCTGTCTCTTGTTTTTCTCCT
TTCCCTCTTCTCTCTGCAGCTCTCATCCTTTCCCCTTTTGCTTGAGAAGT
CCTCTACCAAATGAGTTACATCTCTGCAACTTTTTATTTTTTTATTTTTG
AGACAGGATCTTGCGATGCTTGCGCAAGGCAGGCCTTGAACTTGTGCTCC
CCTTGCCTTGGGCTCTAGAGTAGCTGGGATTGCAGGCTGTATCACAGCCG
GTCAAGCAGAATGCTGTTAAGTTTTGAATGCCAATGGTAGCCCGCCTTAT
TTCGTGCGACCTCCCTGAGCGCCTCGCTCCCTCCTCTTCCCACGTGCCTG
GGTACACACCCGCCCCTACCTTACCCGCCCTTACGTCGGTCCCCACTCTC
CCTTTCTCTCAGTCCTTCTTATCCCTCTCTTCCCGCGTCTTTCACTTCCG
CCCGCCCCAACCCTGCCCGCTTCTTCGCGCCGCCGGGTCCCTCTTCTTTC
CCCCCTTCGTTCCTCGCCCTCTTTTTTCGCTTCCCTCTCGTCCTTCCCTT
TCCCTTTTCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_l13.g1 MSMg01no392_l13.g1 CHROMAT_FILE:
MSMg01no392_l13.g1 PHD_FILE: MSMg01no392_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:21 2005
         (342 letters)



>mm_chr14_52496659_52497400
          Length = 742

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactggagggtagaggcagctgtggggaatcatggagctgtggtcctgagaagagtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcactggagggtagaggcagctgtggggaatcatggagctgtggtcctgagaagagtggg 408

                                                                       
Query: 61  cagacagcaggcgggactggataaggggcccgagagagcagttagagggtagagttaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cagacagcaggcgggactggataaggggcccgagagagcagttagagggtagagttaggc 348

                                                                       
Query: 121 agtctatctgctccctccccaattccttttctcttttcctctgtctcttgtttttctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtctatctgctccctccccaattccttttctcttttcctctgtctcttgtttttctcct 288

                                                                       
Query: 181 ttccctcttctctctgcagctctcatcctttccccttttgcttgagaagtcctctaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttccctcttctctctgcagctctcatcctttccccttttgcttgagaagtcctctaccaa 228

                                                                       
Query: 241 atgagttacatctctgcaactttttatttttttatttttgagacaggatcttgcgatgct 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atgagttacaactctgcaactttttatttttttatttttgagacaggatcttgcgatgct 168

                                                     
Query: 301 tgcgcaaggcaggccttgaacttgtgctccccttgccttggg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgcgcaaggcaggccttgaacttgtgctccccttgccttggg 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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