BAC Information

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BAC

Clone NameMSMg01-393M14
Chromosome14 (Build37)
Map Location 116,841,244 - 116,841,644
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393M14.T7 (MSMg01no393_m14.b1)MSMg01-393M14.TJ (MSMg01no393_m14.g1)
ACCAG494998AG494999
length776785
length of high quality
(start - end)
507 (34 - 540)393 (63 - 455)
definitionCHROMAT_FILE: MSMg01no393_m14.b1 PHD_FILE: MSMg01no393_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:54 2005CHROMAT_FILE: MSMg01no393_m14.g1 PHD_FILE: MSMg01no393_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGCTG
TTGCTACTGAATGGCTGAGAAATGCCTAAAGAAATGTTCAACATTATTAG
TCATCAGGGAAATGCAAAACAATCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGTTCAAAAACTCAGGTGAGAATGTGGAAAAAGAGGAATACT
CCTTCATTGTTGGTATTGCAAGCTGGTTCAACTACTCTGGAAATCAGTCT
GGCGATTCCTCAGAAAATTGGACATAGTACTACCTGAGGACCCAGCTATT
CCAATCCTGGGCATATACCCAGAAGATGCTCCAAGAGGTAATAAGGAAAC
ATGCTCCACTATGATCATAGCAGCCATATTTATAATAGGCAGAAGCTGGA
AACAATCCAGATGTCCCTCAACAGAGGAATGGATACAGAAATTTAATTTT
TTCAAGTGGTAGAGTGTTATGCTGTTTACAGTTCCATCCCACAGGAAAGA
GGAGGCTCTTTCTAACTGAAAGCTCCCACCTATATAATTTTGGTTGAGGG
TGCCTTACAGGTTACATCTTATTAATCTGAATCTTATCTTCTAACTTGTA
GTTCACAGGGTAGAAACTTGAAGCCAGCCCAACTAATTATATTTCTCCTG
AAAATAGTGTTGCCCTTGAGTCTGGAATCCTATAAATTTTTCTTCTTAGC
ATGGAATCAACCCTCTTCAAAAAATTTTTTCTGCAACATAATTCTTGGAC
CTTAATTCCTTTTAAATTTTCAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGCTTAAAATGTTCTCATAGTAACTTGACAATTGATAT
TGCAGTTCTTGGAGGTTTATAGTGAATCCTGCCAAAGGATTTTCTGGAAT
GTGGGTTTGGATAGTTTAAATACTGAACAATGAAATTCTAAGTAGCTTTA
GAAAATTGAGAGAAAAATTCTGGTATTTATTGGCTTAATTCGACTAGAAA
ATTTTAAAATAAAACTTACCTCTATAAATTTGCATTTTGAAGCAAATGAA
AATGTTTGCTTTAGAGCTAAAGAAAGTAAAGTGCCTGTATTTGTAATCAA
TTTAAATGTTTTAAATGTACTGTTGATTTGAACAGCTGATCAATAATGAA
CTGCTTAGTGTGCTTATTTCATAATCATGAATAACAGGTCTCAGTACCTG
ACTTCAGCAGTTTCCACTCACAGCAGCTATGCTCCTGTCTCAACTCATGA
GTCTACTGAGAACAGATAAGTTTGTGTCATTGCTTTGCTTACTTTTTACT
TTGGAAATCCCAAATAGCCTCTTTAGATAATACTTTCCTTCCCATTTCCT
AGGTCTGCTTTAATTGAAGGAAGACTGTTAAAAATCTTTTTGTCCTTTAT
CGTCCCTTGCTTTAAGTCCCTTTCATCCATGTCCTATTGCCCTTTTTCTT
CAGTTTTACTCCCTTTCCATTTCCTCTATATCCCGTGTCGCCATTTCTTT
TTACTGTTTTTTCTCCAATACGCTTATTCTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_m14.g1 MSMg01no393_m14.g1 CHROMAT_FILE:
MSMg01no393_m14.g1 PHD_FILE: MSMg01no393_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:54 2005
         (393 letters)



>mm_chr14_116841044_116841844
          Length = 801

 Score =  690 bits (357), Expect = 0.0
 Identities = 387/401 (96%), Gaps = 8/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttaaaatgttctcatagtaacttgacaattgatattgcagttcttgga------ggt 54
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 201 tgcttaaaatgttctcatagtaacttgacaattgatattgcagttcttggaagctgaggt 260

                                                                       
Query: 55  ttatagtgaatcctgccaaaggattttctggaatgtgggtttggatagtttaaatactga 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagtgaatcctgccaaaggattttctggaatgtgggtttggatagtttaaatactga 320

                                                                       
Query: 115 acaatgaaattctaagtagctttagaaaattgagagaaaaattctggtatttattggctt 174
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 321 acaatgaaattctaagtagctttggaaaattaagagaaaaattctggtatttattggctt 380

                                                                       
Query: 175 aattcgactagaaaattttaaaataaaacttacctctataaatttgcattttgaagcaaa 234
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcgactagaaaatttttaaataaaacttacctctataaatttgcattttgaagcaaa 440

                                                                       
Query: 235 tgaaaatgtttgctttagagctaaagaaagtaaagtgcctgtatttgtaatcaatttaaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaatgtttgctttagagctaaagaaagtaaagtgcctgtatttgtaatcaatttaaa 500

                                                                       
Query: 295 tgttttaaatgtactgttgatttgaacagctgatcaataatgaactgcttagtgtgctta 354
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tgttttaaatgtactgttgatttgaacagctgatcaataataaactgcttagtgtgctta 560

                                                    
Query: 355 tttcataatcatgaat--aacaggtctcagtacctgacttc 393
           || |||||| ||||||  |||||||||||||||||||||||
Sbjct: 561 ttccataattatgaatttaacaggtctcagtacctgacttc 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 801
Length adjustment: 9
Effective length of query: 384
Effective length of database: 792
Effective search space:   304128
Effective search space used:   304128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)