Query= MSMg01no393_p16.b1 MSMg01no393_p16.b1 CHROMAT_FILE:
MSMg01no393_p16.b1 PHD_FILE: MSMg01no393_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:11 2005
(277 letters)
>mm_chr14_29621465_29622141
Length = 677
Score = 501 bits (259), Expect = e-146
Identities = 271/277 (97%), Gaps = 5/277 (1%)
Strand = Plus / Plus
Query: 5 gaattctagaaagaaaaaaagaagaacaggctgactcaacaaatcagctcccgctggcaa 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctagaaagaaaaaaagaagaacaggctgactcaacaaagcagctcccgctggcaa 264
Query: 65 tgggtactagcagacatggttcaagacacgacaaagcaatggaagatctccacactagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggtactagcagacatggttcaagacacgacaaagcaatggaagatctccacactagtg 324
Query: 125 tgttctcagggcatagttcactgggcctcaattcctctctacctgtggagggggaaatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttctcagggcatagttcactgggcctcaattcctctctacctgtggagggggaaatgt 384
Query: 185 aagctcttcctttatcatgtacttgaaagagagagaaagagaaagagagagagagagag- 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctcttcctttatcatgtacttgaaagagagagaaagagaaagagagagagagagaga 444
Query: 244 -ggaggagagagaaagagagag---ggggagagagaa 276
||||||||||||||||||||| ||||||||||||
Sbjct: 445 gggaggagagagaaagagagagaggggggagagagaa 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no393_p16.g1 MSMg01no393_p16.g1 CHROMAT_FILE:
MSMg01no393_p16.g1 PHD_FILE: MSMg01no393_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:11 2005
(529 letters)
>mm_chr14_29779182_29780112
Length = 931
Score = 862 bits (446), Expect = 0.0
Identities = 507/532 (95%), Gaps = 10/532 (1%)
Strand = Plus / Minus
Query: 1 atcccttgattgattcataacaggcactactgtttttggctgctaacgagtgggaggatg 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 728 atcccttgattgattcataacaggcaccactgtttttggctgctaacgagtgggaggata 669
Query: 61 ggagcaagtaggccattggagttatgttgcttggagacctaactttcccttgctccatcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 668 ggagcaagtaggccattggagttatgttgcttggagacctaactttccctggctccatcc 609
Query: 121 tgtattcctttactgagctttctggctcttgtcatatgaactggtccactccatcatacc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtattcctttactgtgctttctggctcttgtcatatgaactggtccactccatcatacc 549
Query: 181 ctccccaccatgctggactgaactttctgaagctatgagctaaaataaatccttcaccca 240
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 548 ctccccaccatgctggactgaactttctaaagccatgagctaaaataaatccttcaccca 489
Query: 241 ctaatttacttttctcagtatttggttgcagcaatgcaaaactctgacactatacttacc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 ctaatttacttttctcagtatttggttgcagtaatgcaaaactctgacactatacttacc 429
Query: 301 taaatggcaatggatctttcttggctctgactgttttgcccacttgtctggtggcccaat 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taaatggcaatgggtctttcttggctctgactgttttgcccacttgtctggtggcccaat 369
Query: 361 ggccatggtacatagcagctccatcagaagaaaataatctccacttcttgagtctgtgat 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 368 ggccatggtacacagcagctccatcagaagaaaataatctccacttcttgagtctatgat 309
Query: 421 tttttt------gggttttttatttcagtgaataattaaactgctttcaagacttgtaag 474
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 308 tttttttggggggggttg---atttcagtgaataattaaactgttttcaagacttgtaag 252
Query: 475 acagcaattcctgcgaaatcctttaagggtcaaactcattgctattagttac 526
||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 acagcaag-cctacgaaatcctttaagggccaaactcattgctattagttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 931
Length adjustment: 10
Effective length of query: 519
Effective length of database: 921
Effective search space: 477999
Effective search space used: 477999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
