BAC Information

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BAC

Clone NameMSMg01-394K19
Chromosome14 (Build37)
Map Location 31,633,591 - 31,633,737
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
Downstream geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K19.T7 (MSMg01no394_k19.b1)MSMg01-394K19.TJ (MSMg01no394_k19.g1)
ACCAG495675AG495676
length786772
length of high quality
(start - end)
147 (137 - 283)462 (84 - 545)
definitionCHROMAT_FILE: MSMg01no394_k19.b1 PHD_FILE: MSMg01no394_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:08 2005CHROMAT_FILE: MSMg01no394_k19.g1 PHD_FILE: MSMg01no394_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGACCGC
GGAATTCTAGGCCTTTCCCCGTTATATGAGACCCTGCCCTTTTTAAAAAC
TGTTTTTATTTCATGTATCTATCAAAGAGGCAGGGGTTAGGCTGGGTAGC
AGTTCCGATGCTGGGATGTTTTAAGTTTGATAATAGCTTGCATTGTTGGG
GTAAGTGGCTTATGTTGCTCATTTGTATGTGAAGTCTGTTTCTGAGACAG
CCAGCCTCAAGCTTTTTAAAGGTATGCTGTGAGGAGAGTGCGTGTAGTTC
ACCTGCTGCTGTCCTCATAGCTTGTCTGCAATCACATCTTTTATGATCCC
TCTTTAACTTGAGTCGACTAACTCACAATTATCTGAATGGACTATACTGT
CCTCCCAGACTTGGATACTTAACTGACCAACACTACACTTTACAGCTATA
TTGGTCTTCTAGGGAAACCTTCTACTTTATGTACCGATTGCCTCTGAAAT
TTTGACCATATCTGCTGATCTCTATTGTGAACCATCTTCATCCTTTTCTC
CTACCTGCAATACCTTACTAGATCCTTTTACTTACACCCTTTTACCTTTT
CTTTCACCACTTTTTACCGCTTCCCTGTTTCCTTTAACATCTGGTATCTC
GTATGGTTCACCGGTCCACTCCTTCTGTTATATGACATATCCTCGGCTTA
ACCGTTCTACCTATTTGCACCCTTAATAGTACGTCTCGCTCACACAAACT
TACCCGCTTTTTGAACCTCTTGCCATCCCTCCGTAN
NCCCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCAAGAAAACATC
TTCAACAAAATCATAGAAGAAAATTTCCCTAACCTAAAGATGGTCATAAA
TGTACAAGCCTATAGAACATCAAATAGATTGGACCAGAAAAGAAAAATCC
TCTCGTCACATAATAATCAAAACACTAAATGCACAGAACAAAGAAAGAAT
ATTAAAATCTGTAAGGGAAAAAGGCCAAGTAACATATAAAGGTGCCATTG
GAATTACACCAGACTTCTCAACAGAGACTCTAAAAGCCATAAAATCCTGG
GCAGATGCCATCCAGACCCTAAGAGAATACAAAAGCCAGCCCAGGCTACT
ATACCCAACAAAACTCTCAATCACCATAGATGGAGAAACCAAGATATTCC
GTGACAAAACCCAATTTAAACAATATCTTTCTACTAATCCAGTCCTATAG
AAAATACTAGAACACAGTCTCCAACACAAGAAGGGTAACTACACCAAAGA
AAACACAAGAAATTAAACATGTCACAACAAACAAAAGAAGAGGAACACAC
NCNCACACAGTATCACCTCCCGCAACAAAAATAACAGNAACTAACCANCA
TTTTGTCTTTAATATCTGTCAAAATCAGTGGACTCAATTCCCCATAAAAA
GACACAGGCTAATAGACTAAATGGGTAAACAGGGATCCCCATTTTTTGTG
GTACAGGAAAAATACCTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k19.b1 MSMg01no394_k19.b1 CHROMAT_FILE:
MSMg01no394_k19.b1 PHD_FILE: MSMg01no394_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:08 2005
         (147 letters)



>mm_chr14_31633391_31633937
          Length = 547

 Score =  269 bits (139), Expect = 6e-77
 Identities = 145/147 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggctgggtagcagttccgatgctgggatgttttaagtttgataatagcttgcattgt 60
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 201 ttaggctgggtagcagttccgatgctgggatggtttaagttcgataatagcttgcattgt 260

                                                                       
Query: 61  tggggtaagtggcttatgttgctcatttgtatgtgaagtctgtttctgagacagccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtaagtggcttatgttgctcatttgtatgtgaagtctgtttctgagacagccagcc 320

                                      
Query: 121 tcaagctttttaaaggtatgctgtgag 147
           |||||||||||||||||||||||||||
Sbjct: 321 tcaagctttttaaaggtatgctgtgag 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)