BAC Information

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BAC

Clone NameMSMg01-395E08
Chromosome14 (Build37)
Map Location 15,940,110 - 15,940,483
singlet/doubletsinglet
Overlap genenone
Upstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLrrc3b, LOC667205, 1700062C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395E08.T7 (MSMg01no395_e08.b1)MSMg01-395E08.TJ (MSMg01no395_e08.g1)
ACCAG496129AG496130
length906775
length of high quality
(start - end)
250 (49 - 298)368 (81 - 448)
definitionCHROMAT_FILE: MSMg01no395_e08.b1 PHD_FILE: MSMg01no395_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:03 2005CHROMAT_FILE: MSMg01no395_e08.g1 PHD_FILE: MSMg01no395_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCTTCGCATCAAACGAGATGATCATGTGGTTGTTGTTTTG
AGGTTGTGTATATAGTGGATTATCATGATGAATTTCCATATATTGAGCCA
TCCTTGCATCTCTGGGATGAAGCCTACTTGATCATGATGCATGATCATTC
TGATGTGTTCTTGGATTCGGTTTGCAAGAATTTTATTGAGTATCTTTGCA
TTGATATTCATAACAGAAATTGGTCTGAAGTTCTCTTTATTTGTTGTGTT
GCGTCTTTGCGCGCATTATTTTTTTTTATACATGTGTACTCATACAACGA
AATTTGGGTTATTACCCTCCTGTTTTTATTCTCCTGGACGTCGTTCTTTC
ACTTTTTTTCATCCCCCCCCCCCCCCCCACCCTTTTATATTCCCCCCCCC
TTTTTTTTTTTCTTCCCCTCCCTCTTTTTCCCCCCCTTTATCCCCCTCCA
CCCCCTCTTTTATCTCTCTTTTCTTTTCTCTCTTCTTCCACTCCCCCCCA
CTCCCTTTTATTACTTCCCCCCCTCCCTCCGTATATATATTTATCCTTCC
TCGTATCTTTTTTTATGCCCTCCTTCTTTGTTCGCCCATACCACTTTTCT
CCTTTTTTCTTTCTCTTCATCCCTCTCTTTTTTTCCTTCCCCACCATTCT
TTTCCCCTTCCGCCCCTGTTGACCTGCTTCTCCTCTTACCCCTTTACTCT
TCTCTTTTCTCCCACCCCCCTTTATTCATCTCCCTCCATTTACCCTCTTT
CTTTTATATGCCCTTCTCTCCCCGATCTATTATCACCACGCCCCTATCCC
ACCTTTTCTCCTTCTACACTCGTCTCCCCCTGCTTTCTTATTTCTCGTCT
TTCTTT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGAGTGCAACACAAAG
AAAGATGATAGAGGTCTTGCAATAGAGGACTAGCCTTGGACGCTTGTTGA
TCCTTTATCAGGCTGCTACCAGTAGTGGTCCTGAGCTAGACAAGTGATCT
CAAAGGCATTCCAGATTGTGACAGTGGAAGTGGTTGTCCTCAAAATTACC
CACAGCAGGCTCAAGAACATGAACCCAACTGCAAGTGTTTAATCCAAAGC
CAGAATGAGTGTGGTACCTATTTCTATACTGCGAATTCTTACAGTTAAAC
TGAAATATATTTGCAATTTCCACAGAGTCCTAAATATACAATTAAACAGC
AGGTAATCATGACAATCACTGTGAAAGTGGTGTGAGTCCCCAGGAGCCTT
CAGGCCATAGTAATTATGCTCCTGCTGNTTATTCAGGNATTTTTTTTCCT
ATATGGGAATTTTCTCCCCTCGGCATTAAAACAGTTACCCAGTCCTGAGA
AATGCGTCCCTCTCCCGCGGAAATGCCTGATTCCCAAAATAAATTTTTTT
AAAACCTACTCTTTGGTCTGGGGGACGGTCTTACAAACGGCTGGGTTTAT
TGGCGCTTCTTACCAAATAGGAGGGGGCGGCACTCCCTGCGCGGTCTTTC
CTCTNATTACCCTGGTAGGTGCCCCCCCCCTAGAGACCGTCCATATCCCT
TTCGCATCCTTAGTGAGCTTTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_e08.g1 MSMg01no395_e08.g1 CHROMAT_FILE:
MSMg01no395_e08.g1 PHD_FILE: MSMg01no395_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:04 2005
         (368 letters)



>mm_chr14_15939917_15940683
          Length = 767

 Score =  632 bits (327), Expect = 0.0
 Identities = 360/375 (96%), Gaps = 8/375 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggagtgcaacacaaagaaagatgatagaggtcttgcaatagaggactagccttgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 194 ttttggagtgcaacacaaagaaagatgatagaggtcttgcaatagaggactagccttgta 253

                                                                       
Query: 61  cgcttg-------ttgatcctttatcaggctgctaccagtagtggtcctgagctagacaa 113
            |||||       ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 254 tgcttgttgatccttgatcctttagcaggctgctaccagtagtggtcctgagctagacaa 313

                                                                       
Query: 114 gtgatctcaaaggcattccagattgtgacagtggaagtggttgtcctcaaaattacccac 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtgatctcaaaggcattccagattgtgacagtggaagtggttgtcctcaaaattacccac 373

                                                                       
Query: 174 agcaggctcaagaacatgaacccaactgcaagtgtttaatccaaagccagaatgagtgtg 233
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcaagctcaagaacatgaacccaactgcaagtgtttaatccaaagccagaatgagtgtg 433

                                                                       
Query: 234 gtacctatttctatactgcgaattcttacagttaaactgaaatatatttgcaatttccac 293
           ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 434 gtacctatttc-agactgcgaattcttacagttaaactgaaatatgtttgcaatttccac 492

                                                                       
Query: 294 agagtcctaaatatacaattaaacagcaggtaatcatgacaatcactgtgaaagtggtgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 493 agagtcctaaatatacaattaaacagcaggtaatcatgacaatcactgtgaaagtggcgt 552

                          
Query: 354 gagtccccaggagcc 368
           |||||||||||||||
Sbjct: 553 gagtccccaggagcc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)