BAC Information

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BAC

Clone NameMSMg01-395F12
Chromosome14 (Build37)
Map Location 115,611,635 - 115,611,970
singlet/doubletsinglet
Overlap geneGpc5
Upstream geneLOC668791, LOC100043821, LOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395F12.T7 (MSMg01no395_f12.b1)MSMg01-395F12.TJ (MSMg01no395_f12.g1)
ACCAG496184AG496185
length754760
length of high quality
(start - end)		498 (47 - 544)485 (75 - 559)
definitionCHROMAT_FILE: MSMg01no395_f12.b1 PHD_FILE: MSMg01no395_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:10 2005CHROMAT_FILE: MSMg01no395_f12.g1 PHD_FILE: MSMg01no395_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTGTATG
ATCATGGGCATCTCTTTCTTTATGTTTGGGAAGTTTTCTTCTATTATTTT
GTTGAAGATATTAGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCAA
TTCCTATTATCCGTAGGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGG
ATGTTTTGAGTTAGGATCCTTTTGCATTTTGTATTTTCTTTGACTGTTGT
GTCGATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCATTT
CTTGTATTCTGTTGCTGATGCTCGCATCTATGGTTCCAGATCTCTTTCCT
AGGGTTTCTATCTCCAGCGTTGCCTTGCTTTGGGTTTTCTTTATTGTGTC
TACTTCCCTTTTTAGTTCTAGTATGGTTTTGTTCATTTCCATCACCTGTT
TGGATATGTTTTCCTGTTTTTCTTTAAGGACTTCTACCTGTTTGGTTGTG
NTTTCCTGCTTTTCTTTAAGGGCCTGTAACTCTTTAGCAGTGCTCTCCTG
TAATTCTTTAAGTGACTTATGAAAGTCCTTTCTTGATGTCCTCTATCATC
ATCATGAGAAATGATTTTTAATCCGGGGCTAGATTTTCGGCTGGGTTGGC
CGGCCCAGAACTAGTGGGTGTGGTAATTGTTCACCTTTGATTATGTTTAC
ACCT

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACCAAAGGAGGAAAAACAGGCTAT
TGAGTGTAATGAAAGGTTTATTTTAAGTCCCTGGTTCCCTTGGTTGTAGG
TGCTGACAAGTGTGAGATCAGAAATGCTAACCTGCAGCTGGAGTCCTTAG
AGGAATCGATACTACAGCCATGAATTCCTATGCAGCATAGAGGCAGGATT
GCTGTTGCTCTTAAGGACCTGTGCTAATTAAATAAGGCCAGCAGTCACTA
TGAAAGGTAAGCTGCTTTTTTCAAAAATCTACCAATTTAAATGTTAATCT
CACCTAAGAAATACCATCACGGCAACAAGACAATTACTGTTTTCCCAAAC
ATCTGGGCACCAGAAACTAGCTGAACATATGGTGTCAGAATGTGCACCCC
AGATAGAAAGCACTGTGAGTGTGCGAATTAGGAGACAGTGTGATGTGTGT
TCTCCAAGCTGCTCATTTTGTCTTAACTTTTGCCTCTCAGGCTTTCTTTT
TTTCTGCCTTGGCATGTTTTGTTTTTATAACAGTACTTAAACTATCCTCT
GGATAATACCTACACATANGCTAATATCCATTGGTATGAAAAGCATAAAA
TGTTACTACCCGGGCCTGAGCTGGGAAAAAAGCCCCTTCCGTTCCCCTTA
GCCCCGGATTACCTGTTATGGGATTTCCACCCAACCCGTGTAGGCCCCCA
CCGATTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_f12.g1 MSMg01no395_f12.g1 CHROMAT_FILE:
MSMg01no395_f12.g1 PHD_FILE: MSMg01no395_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:10 2005
         (485 letters)



>mm_chr14_115611088_115611970
          Length = 883

 Score =  578 bits (299), Expect = e-169
 Identities = 328/339 (96%), Gaps = 4/339 (1%)
 Strand = Plus / Minus

                                                                       
Query: 148 gaattcctatgcagcatagaggcaggattgctgttgctcttaaggacctgtgctaattaa 207
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattcctatgcagcatagaggcagaattgctgttgctcttaaggacctgtgctaattaa 824

                                                                       
Query: 208 ataaggccagcagtcactatgaaaggtaagctgcttttttcaaaaatctaccaatttaaa 267
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 823 ataaggccagcagtcactatgaaaggtaagctgctttagtcaaaaatctaccaatttaaa 764

                                                                       
Query: 268 tgttaatctcacctaagaaataccatcacggcaacaagacaattactgttttcccaaaca 327
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 763 tgttaatctcacctaagaaataccatcatggcaacaagacaattactgttttcccaaaca 704

                                                                       
Query: 328 tctgggcaccagaaactagctgaacatatggtgtcagaatgtgcaccccagatagaaagc 387
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tctgggcaccagagactagctgaacatatggtgtcagaatgtgcaccccagatagaaagc 644

                                                                       
Query: 388 actgtgagtgtgcgaattaggagacagtgtgatgtgtgttctccaagctgctcattttgt 447
           || |||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 643 accgtgagtgtgcgaattaggagacagtgtgatg---cttctccaagctgctcattttgt 587

                                                  
Query: 448 cttaac-ttttgcctctcaggctttctttttttctgcct 485
           |||||| ||||||||||||||||||||||||||||||||
Sbjct: 586 cttaactttttgcctctcaggctttctttttttctgcct 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space:   414675
Effective search space used:   414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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