BAC Information

Click to search

BAC

Clone NameMSMg01-396A24
Chromosome14 (Build37)
Map Location 79,521,745 - 79,522,149
singlet/doubletsinglet
Overlap gene1300010F03Rik
Upstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, LOC629709
Downstream geneLOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396A24.T7 (MSMg01no396_a24.b1)MSMg01-396A24.TJ (MSMg01no396_a24.g1)
ACCAG496730AG496731
length611805
length of high quality
(start - end)		74 (50 - 123)402 (64 - 465)
definitionCHROMAT_FILE: MSMg01no396_a24.b1 PHD_FILE: MSMg01no396_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:06 2005CHROMAT_FILE: MSMg01no396_a24.g1 PHD_FILE: MSMg01no396_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTTTNTCATAATTTGCGGCGCTATACGACTCCTATAGTTCGAGATC
CGCGGAATTCTACTGGGCTGTGCTAAGGATGGACGCTCAATCATACGGAC
CCTATACCAGAATGCATCTGGTCCATGGTGGTACTCCTTGCGCTCAAAGA
ATCATTCTTCAATTTGAAAAGGGCTGGAATTTCACCCTTCACCCACTGGC
CTCAGCTGTCAACTCTTGCCACGGACAACCTTTTTAATTTCCTTGAAAAA
AGTCCGATGGGGAGGGAACCTGGGTTTTTTTCCCAAAAGAGTATTTGGAG
GCCCCCGGGCCCTTTAATATTTGGCAAAAAAAGGAAGTTTTTTCCGAGGG
GGGGGTTCCTTTCTTAAAAAAAGGGCCCCCCGAGNGGGGCCTCCTCCCCC
CCACAAAAAAGGGGGGGGAAAAAACAAGGGGGGAAAACACTCTTTGAAAA
AAAATTTGGGGCCCCCCAAAAAAAAATTCTTTTTTTGTGGGGGTTTTTTT
TGGGGGGGGAAAAAAAAAAAAAAAAAGGGGGCCGAAATAAAATATTTTTT
TTGGGGGGGGTGGTTATTTCTCTTTCACTCCCCCCCCCCCACNAATTCCT
CTCTTTCTCTT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGCCAGATTCAGCTACATAGTAAGTTTGAGGCTAG
CCTGGGCTACATGAGATTATGTCTCAGAAGGAAAAAAAAAAGACAGAATG
TAAGATGATGTTTAATAGGAACATTGATTTAGTTAACACTAACTTAAGCT
ATAAATGGTAATTTCCTGTCTCATGGAACCAGGAAATCCCAGAGTAAAAG
TGTCCAGCTCATAGCTAGGAGTCAGCACGCATGAGAGCTGTTCTTCCTCA
GGGCTAGCTCCCTTCTCACGTACTCACCATCAAGTGGCACCAGGGCTCTT
ATGAGGCTTTATCGTTGCCAGGATAAAATTTGCCAACTTTTTCTTTGCTG
TTCTGAATACATTTGCATTTAGTGAGCTTCACCCATTTTTCTTTTTGATG
CATAGTTGTATGTAGCCCAGGCTAGCCTCAAACTGGGTATCTATCCCAGA
AAGACCCACTTGATCCTCTTATTTCTGCGGCCAAAGAACTGGGATTACAG
GCATGGACCCCCCCCTCCTTGTTTTCGGCTATTCTGAGGGATCTAACCCC
TCCTACTCTTTACTATTTTTTTATTTAATTTACCTATCCCTTTTCCTTTT
TTCCTATTTCCTATACATTCATTCACCCCCCTCTCTCCCCTACTCTTAGG
GGCTTTTATTTGTCGCCAAACTCCCTACTCCCTTTTTCCCAAAGGGGCTG
TTTTCTCCACTGGGCGCTATCCCCCCTGCGGCTTTTTTTTTCTCTATAAA
CACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_a24.g1 MSMg01no396_a24.g1 CHROMAT_FILE:
MSMg01no396_a24.g1 PHD_FILE: MSMg01no396_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:06 2005
         (402 letters)



>mm_chr14_79521547_79522349
          Length = 803

 Score =  733 bits (379), Expect = 0.0
 Identities = 398/405 (98%), Gaps = 3/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagattcagctacatagtaagtttgaggctagcctgggctacatgagattatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 caggccagattcagctacatagtaagtttgaggctagcctgggctacatgagattatgtc 258

                                                                       
Query: 61  tcagaaggaaaaaaaaaa--gacagaatgtaagatgatgtttaataggaacattgattta 118
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcagaaggaaaaaaaaaaaagacagaatgtaagatgatgtttaataggaacattgattta 318

                                                                       
Query: 119 gttaacactaacttaagctataaatggtaatttcctgtctcatggaaccaggaaatccca 178
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 gttaacactaacttaagctataaatggtaatttcctgtctcatagaaccaggaaatccca 378

                                                                       
Query: 179 gagtaaaagtgtccagctcatagctaggagtcagcacgcatgagagctgttcttcctcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagtaaaagtgtccagctcatagctaggagtcagcacgcatgagagctgttcttcctcag 438

                                                                       
Query: 239 ggctagctcccttctcacgtactcaccatcaagtggcaccagggctcttatgaggcttta 298
           |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 ggctagctcctttctcacatactcaccatcaagtggcaccacggctcttatgaggcttta 498

                                                                       
Query: 299 tcgttgccaggataaaatttgccaactttttctttgctgttctgaatacatttgcattta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcgttgccaggataaaatttgccaactttttctttgctgttctgaatacatttgcattta 558

                                                        
Query: 359 gtgagcttcaccca-tttttctttttgatgcatagttgtatgtag 402
           |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 gtgagcttcacccagtttttctttttgatgcatagttgtatgtag 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 803
Length adjustment: 9
Effective length of query: 393
Effective length of database: 794
Effective search space:   312042
Effective search space used:   312042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |