BAC Information

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BAC

Clone NameMSMg01-396B15
Chromosome14 (Build37)
Map Location 113,075,372 - 113,075,782
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B15.T7 (MSMg01no396_b15.b1)MSMg01-396B15.TJ (MSMg01no396_b15.g1)
ACCAG496760AG496761
length781841
length of high quality
(start - end)
411 (63 - 473)86 (64 - 149)
definitionCHROMAT_FILE: MSMg01no396_b15.b1 PHD_FILE: MSMg01no396_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:09 2005CHROMAT_FILE: MSMg01no396_b15.g1 PHD_FILE: MSMg01no396_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGGATCCGCGGAATTCAGT
CAGATTATCCCACTGAGGTAAGTTTGGTTGGAACAGAAGCCAATTATAAG
CCTATATGTAATTCACAGAGAATCCCTATTTTTTTCAAAGCACCACCCAG
AAACTCTGGTAGGAGCCTTCACAATGATCCTGGAGAATTGCATCAGCTTC
TTGATATGTTTTCAGGTGTACATTACCTATGCCTTAAAATGACTTGGTGG
TGGTAGCTGTGGTTTTTATTAATTCTTTAAAATTTTTCATACAAGATTTT
TTTTTTCATTTTTGCATGCACACATTTTCTGGAGTGTACCATGTATGTTC
AGTAGGACGCAGCAAATAGAGGACAGAATAAGGCAGCAAATAAATTACAA
CTAGTTGAAGGTGATTATGAGTGAGGCAGTATGTGGGTGCTAAGAACTGA
ACCCAAGTCCTCTGCAAGAGGACTAAGCACTGTCAATCACTGAGCCATCT
CTCCGCTTCCTTAAAGTGATTCTTAGAATACATTCTTTTTTAAAAAAATT
TTGTCTTTTTTTAATTAAGCATTCATTTTCATCTTATTTTCCCACGTACT
TCCAAAAGCCCTCTCATTGGTCTCCTATCCATTCCCCCTTTTAACTTAGT
TCTACTTTTGGGGTTGGCGTCTCCTCTCGGCTCGGTTTTATATAAATAAA
TTCATTATTACACAAACTAACTCTCTCTCCCTTTATAAAAGAATCCACTT
CAATTCCTTAAAAATAATCCCATATTTCCCN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCAGCGATTCTTTGTTTTGATCTGTAACCCATTTTTTTAATTG
GGTTATTTGTTTGTTTGTTTTGAGTCTAAGTTCTTTGCACATTTTGGATA
TTAGGCCTGTATCCGGATATAGGCTTAGCGCCCACCTTCTTCTCTTCTGT
TTTCCCGTTCCTCTTCCCCATTCACTTCCTCCCTTTTCCAAACCTTTTTC
CTCCCCTTCTCTCTTTTTCCCCTTCCCTTTCCTTTCCTCTACCCTTGCCC
TTCCCCTGCCCCCTTTTTTTTTTTTACCCCTTTCCCCCTTCGACCTCTCC
CTTCTTTCCCTCCCCTCTTTTCCCTCTATCCCTTCCATTCCCCTCCCCCT
ACTATTTTCCATCCCCCCCCCTCCTTTCCTCTTTTCTCTTTTTCCCCTTT
CTCTCCTTTTAATCTTCTTTCTCTCCCTTTTCCCTTTCCCACATTTTTTT
CCCCCTTTTTCCTTCCCTTTTTTTCTTTCCTTTTTCCCCCTTTTTCTCCT
TTCCTTTTTTTCCTTTCTTTTCCCTCCATATCCCTCCCCCTTTCTCTTTT
CCATTTTCCCCCCCTTTTCCCCTTTTTCCCTTTCCTTTTCCATTTCCTCT
CCTCCTTTTTCCATCTCTTCCTCCCTCTTTTTATCCCACCTTTTTCCCCT
TCTCCTTCCTATTTCTTTTCCCTCCCCTATCTCCCCTTCCCTTACCCTTT
TTTTCCCCTCTTCTTCTCTTTCCTCTATACTACACCCCTCCCACCCACTC
TATTACCCTCCACTTCTATTTCTCGAATACTCCTTTTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b15.b1 MSMg01no396_b15.b1 CHROMAT_FILE:
MSMg01no396_b15.b1 PHD_FILE: MSMg01no396_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:09 2005
         (411 letters)



>mm_chr14_113075277_113076087
          Length = 811

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaggtaagtttggttggaacagaagccaattataagcctatatgtaattcacagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgaggtaagtttggttggaacagaagccaattataagcctatatgtaattcacagagaa 447

                                                                       
Query: 61  tccctatttttttcaaagcaccacccagaaactctggtaggagccttcacaatgatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccctatttttttcaaagcaccacccagaaactctggtaggagccttcacaatgatcctg 387

                                                                       
Query: 121 gagaattgcatcagcttcttgatatgttttcaggtgtacattacctatgccttaaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gagaattgcatcagcttcttgatatgttttcaggtgtacattacctatgccttaaaatga 327

                                                                       
Query: 181 cttggtggtggtagctgtggtttttattaattctttaaaatttttcatacaagatttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttggtggtggtagctgtggtttttattaattctttaaaatttttcatacaagatttttt 267

                                                                       
Query: 241 ttttcatttttgcatgcacacattttctggagtgtaccatgtatgttcagtaggacgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttcatttttgcatgcacacattttctggagtgtaccatgtatgttcagtaggacgcag 207

                                                                       
Query: 301 caaatagaggacagaataaggcagcaaataaattacaactagttgaaggtgattatgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caaatagaggacagaataaggcagcaaataaattacaactagttgaaggtgattatgagt 147

                                                              
Query: 361 gaggcagtatgtgggtgctaagaactgaacccaagtcctctgcaagaggac 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaggcagtatgtgggtgctaagaactgaacccaagtcctctgcaagaggac 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)