BAC Information

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BAC

Clone NameMSMg01-396H20
Chromosome14 (Build37)
Map Location 56,856,852 - 56,857,291
singlet/doubletsinglet
Overlap genenone
Upstream geneDhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc
Downstream geneLOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H20.T7 (MSMg01no396_h20.b1)MSMg01-396H20.TJ (MSMg01no396_h20.g1)
ACCAG497055AG497056
length775752
length of high quality
(start - end)		433 (37 - 469)440 (66 - 505)
definitionCHROMAT_FILE: MSMg01no396_h20.b1 PHD_FILE: MSMg01no396_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005CHROMAT_FILE: MSMg01no396_h20.g1 PHD_FILE: MSMg01no396_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCTGCTCTGAGCCCTATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGGTCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGTCAGCACCAATTGTTGAACATGCTGTCTTTC
TTCCCCTGGATGTGTTTAGCTCCCTTGTCGAAAATTCAGTGACCATTAGG
GGTGTGGGTTCCATTTTTGGGCCTTCTCATCTACTTTTTTGGCCTTACTT
TTCTCGCTCCTTTACTAGCATTTCTGTCGCCTTTTTCCTCCCTTTTTCTT
GTTTTCACCTTCCTTTTTCCCGTCCCGGTTGTTCCCCTCCCAAAGCTCTC
CCCTTTCTCTGTATAAAAACTTTTTTTTTTCTCTCCCATTTTTTTTCGCA
TTCCCTTCTCCTCTTCCCTCTTTCC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTGTGAGGGGGAATCCCAGAGTTAGCTTGTTCAA
TTTAGAGATGAACAGAAATCTGTGGCAAGAACCCTTAGACAGGGATGCCA
GCCTAGGACGATGGTTCTTAGATTCTGAAGAGGTAAGTTACAGGGGCAAA
ATCAGTACTAGAAAGTGTCCCAAGACTTAAAGTGCATTGCTTTTTGGAAG
TGTAAAGGCAGAAAGCTCTGCATAGATATGGGAGGCTGAGGGCCAGGCTG
AAAAGAGATTTTGTTTGTTTGTTTAAAGAATTGCTTGTTGAGAGAGACTC
ATGGAAAGATGCAGAAGCAACTTGGTATAGATGATGTAGCAGTGAGAATC
CAGAGACCCATGAGCAGAGAAAACTGATCCCCCCTACCAAGAGAAGCTGT
TCAGATTTTGTTGAGGGCAGAGATAAGGAGCAGATATGGGTAAGGTGGTC
TGGGTTGGGGTGAGCATATTCCTATTATTTTGTCTTTATTTTATTCCTCT
TCCTCTACTTTTTTTTCTCATTCTAATCGTCTTCCCCTATCTCTTTCCTT
TCATTTTATCTCCTATTCTTCTTTCTTTTTTTTCCTTCTCTTCCTCTTTT
CTTTTAATCCCTTTCCTCTCTCTCCCTTTCCCCCTTTTTCCTTCTTCCCT
TTCTTTTTTCCCCCGCCTTTTTCCTTTTTTACTCCCCTCTTCCGATATCT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h20.g1 MSMg01no396_h20.g1 CHROMAT_FILE:
MSMg01no396_h20.g1 PHD_FILE: MSMg01no396_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:37 2005
         (440 letters)



>mm_chr14_56856652_56857491
          Length = 840

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgagggggaatcccagagttagcttgttcaatttagagatgaacagaaatctgtgg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 actgtgagggggaatccaagagttagcttgttcaatttagagatgaacagaaatctgtgg 581

                                                                       
Query: 61  caagaacccttagacagggatgccagcctaggacgatggttcttagattctgaagaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caagaacccttagacagggatgccagcctaggacgatggttcttagattctgaagaggta 521

                                                                       
Query: 121 agttacaggggcaaaatcagtactagaaagtgtcccaagacttaaagtgcattgcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agttacaggggcaaaatcagtactagaaagtgtcccaagacttaaagtgcattgcttttt 461

                                                                       
Query: 181 ggaagtgtaaaggcagaaagctctgcatagatatgggaggctgagggccaggctgaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggaagtgtaaaggcagaaagctctgcatagatatgggaggctgagggccaggctgaaaag 401

                                                                       
Query: 241 agattttgtttgtttgtttaaagaattgcttgttgagagagactcatggaaagatgcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agattttgtttgtttgtttaaagaattgcttgttgagagagactcatggaaagatgcaga 341

                                                                       
Query: 301 agcaacttggtatagatgatgtagcagtgagaatccagagacccatgagcagagaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcaacttggtatagatgatgtagcagtgagaatccagagacccatgagcagagaaaact 281

                                                                       
Query: 361 gatcccccctaccaagagaagctgttcagattttgttgagggcagagataaggagcagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gatcccccctaccaagagaagctgttcagattttgttgagggcagagataaggagcagat 221

                               
Query: 421 atgggtaaggtggtctgggt 440
           ||||||||||||||||||||
Sbjct: 220 atgggtaaggtggtctgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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