BAC Information

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BAC

Clone NameMSMg01-396J10
Chromosome14 (Build37)
Map Location 113,369,509 - 113,369,855
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J10.T7 (MSMg01no396_j10.b1)MSMg01-396J10.TJ (MSMg01no396_j10.g1)
ACCAG497130AG497131
length779755
length of high quality
(start - end)
343 (65 - 407)243 (65 - 307)
definitionCHROMAT_FILE: MSMg01no396_j10.b1 PHD_FILE: MSMg01no396_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:45 2005CHROMAT_FILE: MSMg01no396_j10.g1 PHD_FILE: MSMg01no396_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTACTATAGTTCGAGAACCCGCGGAATTCCACAA
TTTTTGCGGAAGAGCACTGTCTGATAAGGATTCATTTTTTGGGTTTGTAT
ATCGCACCTACCCAACACATTCTCTGGTAAATAAAGGCATACAAGATCCC
CCCAGTTACATTTTCCTTAAGAGACTAATTACAAAGAGGAATGCTCCAAA
TTCAAAGACTTCACCTGAGTGTCTCCTTCTTTGGGCTTGATTTTCAACAA
ACAAATTTAGAGAACAGGGCAGCTGAATCCTTCAGAGAACATTAGAAAAT
GTAAGGCTGCATTATTGCACCGTGTTTCTAAGAACAGTTCAGCAAGAGTG
CCACTTCAAATCAGAATTGTCCGCAGAAATATATAGGTTTTTTTTTTCAG
ATAACACAAACAATCAAGGGCACTTCACATTTCTGAAATATCTCATTTCA
ATTTTGAAGTGAATTTTGCCTTGGTTTTCCCAACATATTTACCCAAGAAA
GATGGTTTACATGGAGAACTGCTAATGATCCTAAATGCTTAATACATTTA
TCAATGAACCCATTACCTTTCTACCTTTTTATAAAATGACGGAAATAAAA
GGTCAATTTCCCCGTTGTGGGAACATTAAAAATTTACCCTTTTCCGGGGC
ATTTCTTATTTGCATATTAATTTTCCTTCCGCTTATTGGCCCATCCTTTT
TTTTCCCCCATTGTGCACGGTCCCCCAGTTTTTCTTATACATAATCATCT
ATCCTGTCCGTTAATTTTTTCGTCTTTCC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTTTAATAGGGTTATTTTATTGTCTGGAGTC
TAATTTCTTGACTTCTTTGTAAATACTGGATATTAGTCCTCTATTGGATG
TAGGATTGATAAGATCTTTTCCAATCTGTTCATTGCCATTTTGTCCTATT
GACAGTATTCTTTGCCTTACAGAAGCTTTGTGATTTTATGACTTCCTATT
TGTCAATTCTTAATCTTAGAACATAAGCCATTTGTCTTCTGTTCAGGAAT
GTTTCCCCTGGGTCNCTGTATTAGAGGCTCTTCCCCACTTTCTCTTCTAT
TAGTTTCAGTGTATCTGGTTTTATGTGGAGGTTCTTGATCCACTTTGACT
TGCCCCCCCCCCCCCAGATAAGAATGGATCAATTTTCATTCTTCTACATG
CTGACCACCACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTTCCACT
GTATGGTTTTAACTCCTTTGTCCAAGACCAAGTGATCATAGGAGTGTGGT
TTCATTTCCGGTTCTTCAGTTTTTTTACTCTGGCTCCCCATTTTTTTCCT
TGGCTTTGTATCCCCATTTTATCTTTCTTTTGACTAATTTTCTTTTCTTT
TTTTTTTCTTTACCTATTCTTTCCCTCTCTATATCCTTTTTATGTTTTTC
ACATTCCTATTTCCCCTCTCTTTTTTCTTTATTACTCCCCTTATTCCTTA
TCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j10.b1 MSMg01no396_j10.b1 CHROMAT_FILE:
MSMg01no396_j10.b1 PHD_FILE: MSMg01no396_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:45 2005
         (343 letters)



>mm_chr14_113369224_113369966
          Length = 743

 Score =  594 bits (307), Expect = e-174
 Identities = 334/347 (96%), Gaps = 7/347 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgtctgataaggattcattttttgggtttgtatatcgcacctacccaacacattctc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cactgtctgataaggattcactttttgggtttgtatatcgcacctacccaacacattctc 573

                                                                       
Query: 61  tggtaaataaaggcatacaagatcc-------ccccagttacattttccttaagagacta 113
           |||||||||||||||||||||||||       ||||||||| ||||||||||||||||||
Sbjct: 572 tggtaaataaaggcatacaagatcccccccctccccagttatattttccttaagagacta 513

                                                                       
Query: 114 attacaaagaggaatgctccaaattcaaagacttcacctgagtgtctccttctttgggct 173
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attacaaggaggaatgctccaaattcaaagacttcacctgagtgtctccttctttgggct 453

                                                                       
Query: 174 tgattttcaacaaacaaatttagagaacagggcagctgaatccttcagagaacattagaa 233
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgagtttcaacaaacaaatttagagaacagggcagctgaatccttcagagaacattagaa 393

                                                                       
Query: 234 aatgtaaggctgcattattgcaccgtgtttctaagaacagttcagcaagagtgccacttc 293
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 392 aatgtaaggctgcataattgcactgtgtttctaagaacagttcagcaagagtgccacttc 333

                                                          
Query: 294 aaatcagaattgtccgcagaaatatataggttttttttttcagataa 340
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaatcagaattgtccgcagaaatatataggttttttttttcagataa 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)