BAC Information

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BAC

Clone NameMSMg01-396M13
Chromosome14 (Build37)
Map Location 9,652,606 - 9,653,119
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneFlnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396M13.T7 (MSMg01no396_m13.b1)MSMg01-396M13.TJ (MSMg01no396_m13.g1)
ACCAG497277AG497278
length1,560745
length of high quality
(start - end)
---548 (61 - 608)
definitionCHROMAT_FILE: MSMg01no396_m13.b1 PHD_FILE: MSMg01no396_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:00 2005CHROMAT_FILE: MSMg01no396_m13.g1 PHD_FILE: MSMg01no396_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTAGCTTACGGCTGTCGTGATTATTGGTTGTTTTTCTTGGACGGTGTGA
AGTGCGTGGGGATTGGTCTCGTGGGCAGATATTTCTTCCTGTAGGGTTTN
ATATGGGAAGATGTGGGATTTGATATTCTTGGCTTAGCNTCGTGTGTAAT
TCAATAGGATTGTAATATTAAACGATGTTGTAACCCATTGTTAATTATAT
TTATTTTCAGCGGAGGCTTGCTCAGTATAATGGACTTATAACCCACGCCC
GACTAAATCACGGACGCCGGTGCTGCGCCGCGGTTTATCGCGCCCGATAG
CGGATTAATGGCCTGGGTGTTAATATTCGNTTGTCCCGGATATTATAATC
TGTCGCGCCGCCATAACACGCAGGCACGACAGTAGATAAATAAATAAGAG
TAAGAATGATGGCTCTGTAGGTAGCGGTTTTCCTGTATATTTAGTGCGCG
CTGCAACCGTTGCGAATTCTACGCGAATTGCTAGTGTTTGTTGCGCTGTT
ATAATAAGAGAAAATAATCGAAGATGTCAGTAAAAGATTGTGTATGTCAT
AGAGAACTTAGCAGAGGAGAGACATAGTAAACAGGAAGAACGCAGAGAAA
AGATATGTCGCGCGGCGCGGTAGGCCAGTTATGTATAATTGTACGCAGAT
TGGTGCGGATGCCGNTATAGATACGTACGCTCGTGGCGGCTGTTATATAT
TGTATTGTGTACGTGAGCGGCGACTTCGCGAGTACGACGAATNCGGTATA
TATGATTATTTATAATAATTCAACGCTCACACCTCCGCCGCGACCGACAT
ATTTGCCTATCGATCACAGCTAATCCAGCGCGCACTATTGTATGTGTGTG
AATAAATAGTACGTAAATATCACCGCAGACCGTGAATATACCACGACTGG
CAGTAATTATCGTAGGTTATAACGCGTCTCGNCCGCTACTAGCGTGCGGA
TATAGTATTGTGAATGCAGNCGCCCTGACATATCAGTACGAATATTTACA
CGAGTCAGATCACATTCGAGTAATACCTTCGGCGCGCGCTGATTCGCGAC
TCGTCTCGAGTCAGATATATATACGAGACCGATGTGACAGCAGCTATATA
TCCACGCAATGGTAGATCACAGNATAGANGACAAGGACAGAATAGACGCG
CATGGAGTGTACACGCGTANACAGACGACCTCAGAGCCGTAAGCGCACAT
AATTGTCAGTGTACGTAGTTATACACATCGTANTATTTCATATAGTAGAT
CATTGTNGTTANTATACATATACTCATAGCTGGGGGAATAAGGNGTAATA
GTAAGTCGTGAANACGTCATACTCTAATATGAGAGTCGCCGCNTGTANAG
ATGATATCATAACAACATATACTACGGCACTACGAATCGCTGTGTTTAGA
TACGAGTAGCGATTAAATNGACATGATATGAAAGTATCACGCATCATATA
ACAGATCGGCTCGCGCGANTNTAANTCGGNGTCGTCGACGGCTGCGCGTN
ATTGCGCGTATGTATTAGTATAGTGTCTGTTGATGTGATTATGCCGCCGC
GCGNCGCTCN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACTCTCTGTCTCCCACACTCTCTTCCTTCTCCTTCCTCTC
TCTCCCTACTCTAACCACCTTATCTAATTTAGGATTCTTTGAGGCTAAAT
ACTCTATGGAATTGATGTACTCAGAGATACACAAGTATGTCGCACACACA
CACACACACACACACACACACACACACACACACACACTTTTTTTTTCTTG
ACCCCCAGGCCTACTGAATGACCATCTTTAGGAACAAGATTGTAAGATTT
GTCATTTTTCTGCTTAGACCTAAACCCCAAGTCATAGGTGCAATGGTAGT
TGAGCACCTTGGTCAGAGACCTAAGTGTTTTAGAGGCAACCGCAGTTTTA
AGGCGTGTGGGTTATGTTCAGCAGACTTTGTTAAACATAGAGCTATGCAT
GGCAGACATCATAACACAGGAAACAACTTGTCACATAAACTTGTGACCCT
CTTTTCAAATCAAATATTTATCTTCCTCACCAATGTTCTCTCCATGGAAA
TTGAAACCACTAGGACAGATTACATGGCTTCTGTGAAATTTTCACACTGG
CTTCTGGTCAACACATGGTAACATCTTTATATAAATATACATGGTCCCAT
CTGGATAGTTAATATAACATTGTAACATCTTTATAATAAATATAAAAATG
TTCCCTTCTGTAATGCCAATATATTGGGCTTTTTTCTTGATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_m13.g1 MSMg01no396_m13.g1 CHROMAT_FILE:
MSMg01no396_m13.g1 PHD_FILE: MSMg01no396_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:00 2005
         (548 letters)



>mm_chr14_9652229_9653176
          Length = 948

 Score =  832 bits (430), Expect = 0.0
 Identities = 502/548 (91%), Gaps = 34/548 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctctgtctcccacactctcttccttctccttcctctctctccctactctaaccacct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 891 actctctgtctcccacactctcttccttctccttcctctctctccctattctaaccacct 832

                                                                       
Query: 61  tatctaatttaggattctttgaggctaaatactctatggaattgatgtactcagagatac 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tatctaatttaggattttttgaggctaaatactctatggaattgatgtactcagagatac 772

                                                                       
Query: 121 acaagtatgtcgcacacacacacacacacacacacacacacacacacacacacacacttt 180
           ||||||||||||                                  ||||||||||||||
Sbjct: 771 acaagtatgtcg----------------------------------cacacacacacttt 746

                                                                       
Query: 181 ttttttcttgacccccaggcctactgaatgaccatctttaggaacaagattgtaagattt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 745 ttttttcttgacccccaggcctactgaatgaccatctttaagaacaagattgtgagattt 686

                                                                       
Query: 241 gtcatttttctgcttagacctaaaccccaagtcataggtgcaatggtagttgagcacctt 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcatttgcctgcttagacctaaaccccaagtcataggtgcaatggtagttgagcacctt 626

                                                                       
Query: 301 ggtcagagacctaagtgttttagaggcaaccgcagttttaaggcgtgtgggttatgttca 360
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||
Sbjct: 625 ggtcagagacctaagtgttttagaggcaaccacagttttaaggtgtgtgggctatgtgca 566

                                                                       
Query: 361 gcagactttgttaaacatagagctatgcatggcagacatcataacacaggaaacaacttg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 gcagactttgttaaacatagagctatgcatggcagacatcagaacacaggaaacaacttg 506

                                                                       
Query: 421 tcacataaacttgtgaccctcttttcaaatcaaatatttatcttcctcaccaatgttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacataaacttgtgaccctcttttcaaatcaaatatttatcttcctcaccaatgttctc 446

                                                                       
Query: 481 tccatggaaattgaaaccactaggacagattacatggcttctgtgaaattttcacactgg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tccatggaaattgaaaccactaggacagattacatggcttctgtgaaattttcaaactgg 386

                   
Query: 541 cttctggt 548
           ||||||||
Sbjct: 385 cttctggt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)