BAC Information

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BAC

Clone NameMSMg01-397E23
Chromosome14 (Build37)
Map Location 14,562,949 - 14,691,088
singlet/doubletdoublet
Overlap geneEG382844, LOC100042045, Gm281
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik
Downstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397E23.T7 (MSMg01no397_e23.b1)MSMg01-397E23.TJ (MSMg01no397_e23.g1)
ACCAG497680AG497681
length772804
length of high quality
(start - end)		459 (68 - 526)283 (132 - 414)
definitionCHROMAT_FILE: MSMg01no397_e23.b1 PHD_FILE: MSMg01no397_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:42 2005CHROMAT_FILE: MSMg01no397_e23.g1 PHD_FILE: MSMg01no397_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,562,949 - 14,563,407)(14,690,806 - 14,691,088)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAATTCT
TNTAAATTTCCCCCTGTCTCTCCTTTGCTTCTCTGATTCTTCTTGGCTAT
TGAATTCACTTCACTACATTCATTTTCTTTTACAGAAGAAGCTTACAATT
TTTGTCTAATTTTGAATATTTTGTCTGAGGATGTCTAGCTAGTAACAGTG
CGCCCCCAAGATGGGGAAAGCCTTTTGAATTCTCTGGGTCTAGTTTCTAT
ATTTGTTTATGCATATCTTTGGCCAAACTGGAGTAAACAGGGTAGGAAGT
TCAATGGGGTTCAAGGTACTCTCTCTCAGTTTGACATCATTAATGAAAGG
AAATAAAACTGTAATTCATGTAATGTATGTTAAATAGCCCAAAGAGTTGT
TTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGAATAGACCAGGAC
ATGCCCGGGCAGGCCCATTGCCTCCCTAGCTCCCACCCCTCTGACCTAAG
TTAAATGTTACAGGCTGCTGATGTTTAAATGGACCAATCATGTGAAACTG
CGCCAATTCCACCCCCAGCCCCACTCCTTTTCTATAAAAACCCCTAGCTT
CCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTTGTGTGAGATACGTTTC
GACCCGCAGCTCCGCCCTTAAAAACCCCTTGTTGTTCATTCAGGGGTGGG
GGCCAATTCCGGGATCTTGGCGGCCCCCCAAACCGGAACTGAAAGGGGGG
TTCCCCCCGGAATCTTTTCTTC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTGCCCACTTCTTTTGAACATGAGTGCTATAGATAGATGCTAGA
GGAGAACTTCATGGTCACACAACCTCCGAGAAGAATGCTTGCCTGGAGAT
TCAAAATAAACACTAGCATAGCGGAAACCCAAAGAAGTCTTGCCATAAAA
GCCTCTTTAATTTTTATTTAATTGAGGACTTCGTATTTGGCACATTCATA
TCTCAAAGATGTTAGTGGCCATTATAGCTTGTTCTGGCATCTACTCCTTT
GTAATATTAGAATTTTCACTTTTGTAATATTAGACCATGAACAGTTCTGT
TCATCTCAGTCTTTTTCTTTTTCTTTTTTCTCATTTTTTAAAAGATTTAT
TAATTAATTAATTTATCTATGCATTTATTTATTTATTCATCAACTACATG
CGNGGCCCGTCCCCCCCATTCCCCCGTAAAAGGTTCCCCCAAAAACCCCC
CTCCCCCACCAAATTTTTCCCCCCAAACATGGTGNNCAAAAATNTTTTCC
CCCTACCGTCACCGAATTTTTTTCCCATTCTCTTCCCCCCCCAAAACAGT
TTTTCCCCCCCCAAAACAGTTCCCCCCTATCCCCAATTACCCCCCAGCNG
AAGACCATTTTCCCCCCCCCCCACAAAAAAGTTTTTTCCCCCCCCCCCCC
AAAATACTCCCCCCCAACCAAAAATCCCCCCCCCTTTTCCCCCAAAGAAC
CCCCCGTTTTTCCCCCAAATAAAATTGTTCCCCCCCCGACAAAAAACTGC
CTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_e23.b1 MSMg01no397_e23.b1 CHROMAT_FILE:
MSMg01no397_e23.b1 PHD_FILE: MSMg01no397_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:42 2005
         (459 letters)



>mm_chr14_14562749_14563607
          Length = 859

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcctttgcttctctgattcttcttggctattgaattcacttcactacattcattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcctttgcttctctgattcttcttggctattgaattcacttcactacattcattttc 260

                                                                       
Query: 61  ttttacagaagaagcttacaatttttgtctaattttgaatattttgtctgaggatgtcta 120
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 261 ttttacagaagaagcttacaatttttgtcaaattttgaatattttgtctgaggaggtcta 320

                                                                       
Query: 121 gctagtaacagtgcgcccccaagatggggaaagccttttgaattctctgggtctagtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagtaacagtgcgcccccaagatggggaaagccttttgaattctctgggtctagtttc 380

                                                                       
Query: 181 tatatttgtttatgcatatctttggccaaactggagtaaacagggtaggaagttcaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatttgtttatgcatatctttggccaaactggagtaaacagggtaggaagttcaatgg 440

                                                                       
Query: 241 ggttcaaggtactctctctcagtttgacatcattaatgaaaggaaataaaactgtaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttcaaggtactctctctcagtttgacatcattaatgaaaggaaataaaactgtaattc 500

                                                                       
Query: 301 atgtaatgtatgttaaatagcccaaagagttgtttgtgagctttgaaacctggggctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaatgtatgttaaatagcccaaagagttgtttgtgagctttgaaacctggggctgag 560

                                                                       
Query: 361 aacatagcagaatagaccaggacatgcccgggcaggcccattgcctccctagctcccacc 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatagcagaacagaccaggacatgcccgggcaggcccattgcctccctagctcccacc 620

                                                  
Query: 421 cctctgacctaagttaaatgttacaggctgctgatgttt 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctgacctaagttaaatgttacaggctgctgatgttt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_e23.g1 MSMg01no397_e23.g1 CHROMAT_FILE:
MSMg01no397_e23.g1 PHD_FILE: MSMg01no397_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:42 2005
         (283 letters)



>mm_chr14_14690537_14691219
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgcttgcctggagattcaaaataaacactagcatagcggaaacccaaagaagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agaatgcttgcctggagattcaaaataaacactagcatagcggaaacccaaagaagtctt 493

                                                                       
Query: 61  gccataaaagcctctttaatttttatttaattgaggacttcgtatttggcacattcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gccataaaagcctctttaatttttatttaattgaggacttcgtatttggcacattcatat 433

                                                                       
Query: 121 ctcaaagatgttagtggccattatagcttgttctggcatctactcctttgtaatattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctcaaagatgttagtggccattatagcttgttctggcatctactcctttgtaatattaga 373

                                                                       
Query: 181 attttcacttttgtaatattagaccatgaacagttctgttcatctcagtctttttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 372 attttcacttttgtaatattagaccatgaacagttctgttcatctcattctttttctttt 313

                                                      
Query: 241 tcttttttctcattttttaaaagatttattaattaattaattt 283
           |||||||||||||||||||||| ||||||| ||| ||| ||||
Sbjct: 312 tcttttttctcattttttaaaatatttatttatttatttattt 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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