BAC Information

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BAC

Clone NameMSMg01-398F22
Chromosome14 (Build37)
Map Location 90,856,154 - 90,856,679
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398F22.T7 (MSMg01no398_f22.b1)MSMg01-398F22.TJ (MSMg01no398_f22.g1)
ACCAG498487AG498488
length753749
length of high quality
(start - end)
526 (72 - 597)474 (78 - 551)
definitionCHROMAT_FILE: MSMg01no398_f22.b1 PHD_FILE: MSMg01no398_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:05 2005CHROMAT_FILE: MSMg01no398_f22.g1 PHD_FILE: MSMg01no398_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAATTGACGATGACAGTACATTAGTGCAGAGTGTTCGGTA
TATTTTCTTAGCAAATAAAGCTGCTTTGATTTCTAGTTTAGTTGACACAG
ATGTCTCATCACAGGAAATGAGAAAATAGTGTTTTTCTGTACAGTTCTTC
TGAGATAATTGGTATATTCATGCCAGTTAGGGTCAACTTATTATTCTAAA
GATAAAGATTAAATAGCAGAATTCAGAACACCTACTTTGAGACAAGATTC
ACTGGTTTATAAATTCAGAGCATCAGAACAAATGTCTTTCGTTGTTTTGT
AAACCTCCAGGTACCTGAAGTGTAAGAATAGGTTATTAATAGGATAGTTT
TAAAGAAAGATAGCAATCTCAAAACAACTTTGATATTTTGCATGACCCAT
ACACAGTAGGAATCTCCAAAATTATACATGCAATTTTAAAAGCAGGATAA
ATGCTGAACAGACACCATATGCAAAATGAGCGATTATTCTAACAATGACA
ACGTACTGCCTATTCATGCAAGAAGATATTCAACATAATCAAGTGTTGCA
CTGTTGATTAGCTCACGGGCTCCAGAAACTTGCTGTCAAACCTTGTGACT
TTGAGTAGAACAAGTAAGAATACAAGTGGGGAACTTTCCCCTACAGGCAA
AAAGGAAGGTTGGGAGGACAGATGTGGNTAGGAAAAACTACACCCCCCCC
CCC
NNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAAACAAACTGACCAGGTTC
AATAGACACTTCTTCCTCCAATGGTCTATAAATAGTAAACATTGCTGAGA
GTCACACAAAGACAAGAAAGGCTGCATAAAGAACTCATGGAAAATCAGGA
CAAGTATGGCTGCTGGAAAGGATCAGAGAACAGCCAAGATGTCTAAAAGA
AGCTGAGACTGGGAAAACTGCCTTGAAGGAAAAAAACAAAAAACAAAAAA
CAAAAAACTGCAGCTGAGTTGTCTAGAAGATGCTCACACAAATAGTGTGA
TCTAGAAAGGATGTTCTCCCATCTGTTGGGTTGTCTGCAGGCTGTGCAAT
GTGATTCACACTTCCAGTTTTTTTGTGACTTTTCACCCACACTGAGATGA
ACTTTGTTTACAAAGCTGTCTTTGAGACATTTCAACTCCTACACACAACT
CTTCACCCGTATTCCTTTAAGTTAGTCACTAAAACTCATTCATTGCCCAA
GTAGGACTTTGGTGCACTCTATTGTTTATTCTGACATTGGTTCACTATGT
GNAATAAAACATATTTGTTCATATTTCTCCCAGGATAGAGTAACAGTAAT
ATGTGGGTGAAATATTGGAATAAGTTTATTATTAAAATGAAAAGTTGTGG
ACCAAACAAATAGGGCTTTTTGCGGGGCACCTTTGCCGGCCTTAAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_f22.b1 MSMg01no398_f22.b1 CHROMAT_FILE:
MSMg01no398_f22.b1 PHD_FILE: MSMg01no398_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:05 2005
         (526 letters)



>mm_chr14_90855954_90856879
          Length = 926

 Score = 1017 bits (526), Expect = 0.0
 Identities = 526/526 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagtacattagtgcagagtgttcggtatattttcttagcaaataaagctgctttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagtacattagtgcagagtgttcggtatattttcttagcaaataaagctgctttgatt 260

                                                                       
Query: 61  tctagtttagttgacacagatgtctcatcacaggaaatgagaaaatagtgtttttctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagtttagttgacacagatgtctcatcacaggaaatgagaaaatagtgtttttctgta 320

                                                                       
Query: 121 cagttcttctgagataattggtatattcatgccagttagggtcaacttattattctaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttcttctgagataattggtatattcatgccagttagggtcaacttattattctaaag 380

                                                                       
Query: 181 ataaagattaaatagcagaattcagaacacctactttgagacaagattcactggtttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaagattaaatagcagaattcagaacacctactttgagacaagattcactggtttata 440

                                                                       
Query: 241 aattcagagcatcagaacaaatgtctttcgttgttttgtaaacctccaggtacctgaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcagagcatcagaacaaatgtctttcgttgttttgtaaacctccaggtacctgaagt 500

                                                                       
Query: 301 gtaagaataggttattaataggatagttttaaagaaagatagcaatctcaaaacaacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaagaataggttattaataggatagttttaaagaaagatagcaatctcaaaacaacttt 560

                                                                       
Query: 361 gatattttgcatgacccatacacagtaggaatctccaaaattatacatgcaattttaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatattttgcatgacccatacacagtaggaatctccaaaattatacatgcaattttaaaa 620

                                                                       
Query: 421 gcaggataaatgctgaacagacaccatatgcaaaatgagcgattattctaacaatgacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaggataaatgctgaacagacaccatatgcaaaatgagcgattattctaacaatgacaa 680

                                                         
Query: 481 cgtactgcctattcatgcaagaagatattcaacataatcaagtgtt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtactgcctattcatgcaagaagatattcaacataatcaagtgtt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)