BAC Information

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BAC

Clone NameMSMg01-398G11
Chromosome14 (Build37)
Map Location 112,521,074 - 112,567,613
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G11.T7 (MSMg01no398_g11.b1)MSMg01-398G11.TJ (MSMg01no398_g11.g1)
ACCAG498513AG498514
length761763
length of high quality
(start - end)		635 (44 - 678)532 (73 - 604)
definitionCHROMAT_FILE: MSMg01no398_g11.b1 PHD_FILE: MSMg01no398_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:07 2005CHROMAT_FILE: MSMg01no398_g11.g1 PHD_FILE: MSMg01no398_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,521,074 - 112,521,704)(112,567,082 - 112,567,613)
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTACTATTATTTGGTATTGTGCTACTTAATGAATGAAAAAGTAAAA
CTGAGATTAGAATACTGATCTGACAGTATAAGCAAATGGCTAATTGTTTA
TTATTATGCAGGCTTTATTATAATACCATTAATATAAATGCATGGTTTGT
ATTCATTATTTATATCTAGAACTCTTCTGAGTAAATGCTTGCAAATAATC
TTAAGAGTATATGAAAGGGTTGCTATTACCATGAAATATAAATATGAAAT
AGAAATAAGAAGCAAGAGAAGTAAAACCATTAAGGCTGTCATACAAAGAG
AAAATAAATAGCTTGGAAATGTATCTTAAAAAATGTTATTCAAAGTTAGT
ATTATATATGTAAAAAATATATATTTGATTTTAAAGAAGCCACTTCCCTA
TTCATTCTGTAGTACATTGCTTACTTTCAAATATATTTCTTATTAAAAAA
TGAGTAATTGTTCATCACCTAGATAATACATCCTTGAATAAGACAGATGA
TTGATGTTAATCTTATTTTTTCATATTAATTTTCATAGCCTTACATATTT
AATGTACTCCTCTTGAATGATCTACAGCTAATGGAAAAGATGGAGACACA
TGGTAATAATTTTAAAGTCCTTTGAGAATCTATAGTTAACCAATTTCAAA
GTGTGACAAATAGACAATGTGGGAAAATCTAATATTTGAGCCTGTCCAAA
TACAATGAAAC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAGTTTTATTGGCTGCAGTGAATTTG
ATGATATATAATTTTAGAGGTCCTCTGAAGAATTAGCATTATGTGATGAG
TACTGATTAACGGGAACTAATAAGTGTTCCATGTCTTTAAGAGTTACTCT
AATTTAAATCTAATCATCCTATATTTCTAACAGATAGCTATTTCCCTCTC
CTCAGCATTCTAGCATTCATAATAATTATTTTCCTACATTTTAAGTCATT
GTTCACAAGCATGTATTTTCTCAGGACCCTATTTAAAATTTATATCTTTC
TAAAGAACTGTTCAGTCGTCAGCCATCTTACAAGATATAATGTCTAAATA
AGTATACACTAGGATTATTTTTGTATAATCTCTTTTCTTTGATGTGCACT
TCCGTGGTTATCTCTAATCCAACCTGTACAAACCTCTTTCATGTTTAGCC
TACTCTGTTTCATCTGAACGCAATGTTTTTGTCATTATTTCTATTGACTG
GATATGTTTATATGTATGAACAGGAATACCCACTAGTAACTCATATTGCT
TCCGTTGTACCCCAAGTCTAGAGAGTAAAAGATTTACTCTCTTATGCAAT
GATCAATACCAACTTGGGAAGAAAGAGTTAATTTGGCTCACATGTTCCAG
AAAAAAAATCGCTGAGGTAAGTCTTGCCCAGAACTTCAGTTGGAAAAAAA
AAAACTTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g11.b1 MSMg01no398_g11.b1 CHROMAT_FILE:
MSMg01no398_g11.b1 PHD_FILE: MSMg01no398_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:07 2005
         (635 letters)



>mm_chr14_112520870_112521904
          Length = 1035

 Score = 1151 bits (595), Expect = 0.0
 Identities = 622/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactactattatttggtattgtgctacttaatgaatgaaaaagtaaaactgagat 64
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcactactaatatttggtattgtgctgcttaatgaatgaaaaagtaaaactgagat 264

                                                                       
Query: 65  tagaatactgatctgacagtataagcaaatggctaattgtttattattatgcaggcttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tagaatactgatctgacagtataagcaaatggctaattgtttattattatgtaggcttta 324

                                                                       
Query: 125 ttataataccattaatataaatgcatggtttgtattcattatttatatctagaactcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttataataccattaatataaatgcatggtttgtattcattatttatatctagaactcttc 384

                                                                       
Query: 185 tgagtaaatgcttgcaaataatcttaagagtatatgaaagggttgctattaccatgaaat 244
            |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 385 ggagtaaatgcttgcaaataatcttaacagtatatgaaaggattgctattaccatgaaat 444

                                                                       
Query: 245 ataaatatgaaatagaaataagaagcaagagaagtaaaaccattaaggctgtcatacaaa 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ataaatatgaaatagaaataagaagcaagagaagtgaaaccattaaggctgtcatacaaa 504

                                                                       
Query: 305 gagaaaataaatagcttggaaatgtatcttaaaaaatgttattcaaagttagtattatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagaaaataaatagcttggaaatgtatcttaaaaaatgttattcaaagttagtattatat 564

                                                                       
Query: 365 atgtaaaaaatatatatttgattttaaagaagccacttccctattcattctgtagtacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgtaaaaaatatatatttgattttaaagaagccacttccctattcattctgtagtacat 624

                                                                       
Query: 425 tgcttactttcaaatatatttcttattaaaaaatgagtaattgttcatcacctagataat 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcttattttcaaatatatttcttattaaaaaatgagtaattgttcatcacctagataat 684

                                                                       
Query: 485 acatccttgaataagacagatgattgatgttaatcttattttttcatattaattttcata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatccttgaataagacagatgattgatgttaatcttattttttcatattaattttcata 744

                                                                       
Query: 545 gccttacatatttaatgtactcctcttgaatgatctacagctaatggaaaagatggagac 604
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccttacatatttaatgtattcctcttgaatgatctacagctaatggaaaagatggagac 804

                                          
Query: 605 acatggtaataattttaaagtcctttgagaa 635
           |||||||||||||||||||||||||||||||
Sbjct: 805 acatggtaataattttaaagtcctttgagaa 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no398_g11.g1 MSMg01no398_g11.g1 CHROMAT_FILE:
MSMg01no398_g11.g1 PHD_FILE: MSMg01no398_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:07 2005
         (532 letters)



>mm_chr14_112566882_112567813
          Length = 932

 Score = 1013 bits (524), Expect = 0.0
 Identities = 530/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagttttattggctgcagtgaatttgatgatatataattttagaggtcctctgaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aatagttttattggctgcagtgaatttgatgatatataattttagaggtcctctgaagaa 673

                                                                       
Query: 61  ttagcattatgtgatgagtactgattaacgggaactaataagtgttccatgtctttaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttagcattatgtgatgagtactgattaacgggaactaataagtgttccatgtctttaaga 613

                                                                       
Query: 121 gttactctaatttaaatctaatcatcctatatttctaacagatagctatttccctctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gttactctaatttaaatctaatcatcctatatttctaacagatagctatttccctctcct 553

                                                                       
Query: 181 cagcattctagcattcataataattattttcctacattttaagtcattgttcacaagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagcattctagcattcataataattattttcctacattttaagtcattgttcacaagcat 493

                                                                       
Query: 241 gtattttctcaggaccctatttaaaatttatatctttctaaagaactgttcagtcgtcag 300
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 492 gtatttcctcaggaccctatttaaaatttatatctttctaaagaactgttcagttgtcag 433

                                                                       
Query: 301 ccatcttacaagatataatgtctaaataagtatacactaggattatttttgtataatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccatcttacaagatataatgtctaaataagtatacactaggattatttttgtataatctc 373

                                                                       
Query: 361 ttttctttgatgtgcacttccgtggttatctctaatccaacctgtacaaacctctttcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttttctttgatgtgcacttccgtggttatctctaatccaacctgtacaaacctctttcat 313

                                                                       
Query: 421 gtttagcctactctgtttcatctgaacgcaatgtttttgtcattatttctattgactgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtttagcctactctgtttcatctgaacgcaatgtttttgtcattatttctattgactgga 253

                                                               
Query: 481 tatgtttatatgtatgaacaggaatacccactagtaactcatattgcttccg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgtttatatgtatgaacaggaatacccactagtaactcatattgcttccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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