BAC Information

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BAC

Clone NameMSMg01-398J11
Chromosome14 (Build37)
Map Location 15,724,903 - 15,725,146
singlet/doubletsinglet
Overlap geneNek10
Upstream geneGm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
Downstream geneLrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J11.T7 (MSMg01no398_j11.b1)MSMg01-398J11.TJ (MSMg01no398_j11.g1)
ACCAG498657AG498658
length1,683765
length of high quality
(start - end)
---244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no398_j11.b1 PHD_FILE: MSMg01no398_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:22 2005CHROMAT_FILE: MSMg01no398_j11.g1 PHD_FILE: MSMg01no398_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAACATAGCAATCTATACTATCTATATAGCGNGGGTGCTTTCGCTCTTC
TACACATTATGTTTTCGGGCCTGCAGAGAGAGTGTGTGGTGTTTTTATGT
GCTTATTTTATTGTGTTATATTATTAAAGCACTATGTGATTGGCTGTGTG
TTGTGTGTGTGCTGTTACATACATTATATATTCATATCAGATACTAACTA
TATCTTATTATTATTAATTGACAGTGACTGAATTAGATGATCATGCNCAG
TAATGGATGTAGGTCGTGATAGATCAACAGCGTCGGAAGTGGACAGATGT
GATGGTTATGTCCCTGCGTATCGCACCACGAAGCAATACACTAACNCGCG
CGCTGGTGAGAGAGCCACAGATGATCCACATTTGCTCCGAAGCAGCAGAT
ACCTGCTGCGCGAAGCCAGCAGTCGCCAGTATATCACGATGATCATAGAG
CCGTAGGATACACNATTGACTATACGCACACAACATCTACATACTATCGT
AGCNCACAACTCTCATATGATATACAATATAGACGAGAGGGAGGCGGCGA
CGGNCGGAGTGTAGGCGATATAGAGGCGGAGTAGTAGTGAAGTGTGNNTC
GACAGATGTGGGCGTAGAGGAGAGTCGNGGAGCGAGGAGATGGTGTAGTG
GTTGATATGAGTCGTATGACGAGCGCGCGAGACGGCGACTGAGTAGATGT
CCGCGCGAGTGGTACTCNACTCAGTATGTTCGTACCGCACGCACATGATC
ACGAGATGTGTTGAGCACGCGCGACTCACCTNTATATCTNTAGCTATATA
ATTAGATNTCTCATACACGGAGNCCCAGAGATAGACCGCACGACAGATAT
TGACACTCGCAGGCACCATACGACGCAGTCGCGTTCCGACACGTCACTGC
GTTTGTGTACGATGTAGCCATATCGCGTAGTTGTACAGACAGTATATGTA
TCAGTAATCGACTGGACATATGTCATAATGTTATCCGCGCACGAACACAT
GAATGAATATGTAAACGACAGGTGCACATTTGACGTCATATTAGACACCG
CCTCCAGCATACTAGTGTGAATATCTGATAAAGACACGCGTACGAAACTC
ATGTCATCACCACACAACTATTATTATATATGATNGCAAGCATGTACACT
CATAACTATATCAATANTAAGACGCGGCACGCGCGACTATACAGTCTTAC
CTCCCAGTCTCACTAATATATGTCAGACTACTCATGCTGCGTGATACGTA
TGTACGAGGCGACTCAGTATTACACACTGTATCGNGTATTACTTCTATNG
TATCTCTCATCTGCGCACGCCGACTNACGCCGCCTGATATGTCTCGAGCT
CNCACGCGTCTCGACGCAATAGTTATGACGCCGATGCCGATCCTACGTTA
TAGCGCTATGTGTTATAGTGATGCGCACGACTGGTGTATAGTCATGANTA
TATACATACTACTCACGCGAAGCAGCGAGTATACGATGANGANGACGATT
GCAGANTGATATGTGACTTNGTCGTCGCGATATATCTAGTATCAAATCAC
ACTCATGCTTGCTCTCTATATATATGCGTGATACGACCTCTAGTATCGAC
GGNCTGCNGCTCNGATNAANGACAGTGTCAAAGACGCATATATGATGACA
CGAGTCACACACTACAGCACTATACTCAACAGN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCCTACATGGTTGGGAGACTTAAGACCA
AAATGTCAGCAGGTCACACATGACATTTATATTGATTAGAGATGCATATT
GATAGATTCAACAGAATTATAGTTGCAGGGTTAGTCCCCAAGAGCTCAAA
GACTTTGGATATGCCAAACCATGATCCCTCTTTTCTCTGGAAAACTTTTA
CAAAAAAACAAAATCAAACCTAAAAGTTTCCTCTCATTCTGCAGATACAC
TCATCTGTATTGATCNGTANTCTTGACCAAAGAATACCCTCCTAGTTAAA
AGGAATGAGTTACCCAGACACTTGGAGGATTCTCTCATCCCAGAGCCGAT
TTCTCTGGTCTTGACGCCATTCCAGGCCATTTACAAGTGGCTGTGATGAC
ACTGATCTATCTGTAGAGACTGGGATGGCCCTTGAGGAAGATCCTTACTC
CTCATATCTGCTTTTGATCAGTGTCTAAAGAAAAAGAACCCATGTTTTAT
ATTTATAAAGGCCTTTGTATGATCACACATTGCAACTGAGAGTGTGCATT
TTTTACTGAATCTTTATTCTTACTTTATCCTAGTATACTTTTTGATTTCT
TTTTATACAGCTGTCGATATTCGGCTTTAACAACCATCTCGTCAGGCTCC
TTTGTTACTGTCCGCTTTCTCTATTCTTATTTTCACCATCCCTTCCCTCT
TTTCTTTCTGGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j11.g1 MSMg01no398_j11.g1 CHROMAT_FILE:
MSMg01no398_j11.g1 PHD_FILE: MSMg01no398_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:22 2005
         (244 letters)



>mm_chr14_15724703_15725346
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 237/248 (95%), Gaps = 8/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcctacatggttgggagacttaagaccaaaatgtcagcaggtcacacatgacatttat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcctacatgtttgggagacttaagaccaaaatgtcagcaggtcacacatgacatttat 260

                                                                       
Query: 61  attgattagagatgcatattgatagattcaacagaattatagttgcagggttagtcccca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 attgattagagatgcatattgatagatacaacagaattatagttgcagggttagtcccca 320

                                                                       
Query: 121 agagctcaaagactttggatatgccaaaccatgatccctcttttctctggaaaactttta 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 321 agagctcacagactttggatatgccaaaccatgatccctcttttctctggaaaac----a 376

                                                                       
Query: 181 ----caaaaaaacaaaatcaaacctaaaagtttcctctcattctgcagatacactcatct 236
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaacaaaaaaacaaaatcaaacctaaaagtttcctctcattctgcagatacactcatct 436

                   
Query: 237 gtattgat 244
           ||||||||
Sbjct: 437 gtattgat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)