BAC Information

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BAC

Clone NameMSMg01-398K05
Chromosome14 (Build37)
Map Location 65,540,490 - 65,540,738
singlet/doubletsinglet
Overlap geneHmbox1, LOC100043657
Upstream geneSox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b
Downstream geneD14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398K05.T7 (MSMg01no398_k05.b1)MSMg01-398K05.TJ (MSMg01no398_k05.g1)
ACCAG498693AG498694
length771741
length of high quality
(start - end)
96 (146 - 241)242 (76 - 317)
definitionCHROMAT_FILE: MSMg01no398_k05.b1 PHD_FILE: MSMg01no398_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:26 2005CHROMAT_FILE: MSMg01no398_k05.g1 PHD_FILE: MSMg01no398_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGAAGGCGCGGAA
NNCAGAGCACTTACAAAAGAATGGTTGCTCATTGGTAGGCTTCTTCAGAG
AAACAGAAGACATACTCATTCCACACATATGCACGTGCTATACAGTGAGA
CAGACAATAAGCAAAGAGATTCTAAGGGACTGGCTCATGTGATAAGGGGG
AACTGAGAGGCCCAGAGGCCTACAGTTGTCCTGCTGGAGGCCTACGATTG
TATTATCTATTCCAGTCAGAAAGCTGGTAGGCTCAAGACTCATAACAGCC
AACACTTCCATCTGATTTCTACTTTTAACAAAGAGCCAGTGTCTCAGCGA
GGTCAAAAGTAGTTCTTCTCGCCCCTTCCATTCACTCTTGAGTTGATTTA
ATGAATGAATGTACGTCTAGAGAAAATATCCAGTCTACCTCTGACCTTCT
TGTGCAAGATATATCTCATCCACCTATTTGTGCATACTTTCCTCCTTTTT
TTTCTCACTCACTTTCTCTCCTTATATTTTATGTTCTCTTATTTTTTTCC
CTTTATTTACATTTTTTATACCCTTCTCTATTTTTTTATATATTCTCCGA
TTTGTCTGATTGTTTTTTGATGCCACCATTAACCTGCGTCTCCTAATCAC
ATACCTCACATATACTAATTCCCTTAACAAGCACATCACTTTTTTTTTAT
TTTACTTATTTGCTATGATGAGAGCTAACTCCTTCTTTTTCTCTCTTAAC
AACCTCTATCTTCATATCTCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGAAAAACTCGAACAAGCCTGGGTGACATCTCAAAAA
CAAGAAACCGACTATGTCAGGAAGCAAAGGCTGAATGGTACCTATAACAT
GAGCCGCAACTGTTTCATGGAGGACGACCCCCAGATGGAGCAAACCAGTG
GCACCACTGTATCCCTAAGCTCAGCCCCTGCTACGCCCAAAAGCAAGGTT
GAACGGGATGCTAAAGGAAATAAAGCCAAGGTGAAGGATGAGCCACAGAG
AAGATCTGCAAGGCTGTTTGTTATATCTGCTTCTCCAAAGCCAGAGCCCA
AGCCTAAAACATCCCCTGCAAAGAAGGGACAAAGGTACCCGAGGGGAGGA
AGGGGAAAGCCAATGGTGGTAAGGATGTGACTAATCCTGCAGAGAACGGA
GACCAAAAACAGATGAGGCACAGAAAGCTGAAGGTGCTGGAGATGCCAAG
TGACATGTGTGCATTTTTATAACTATGTACTTCTAGTGACTGCACAGTTT
ACAATACTATTTTTCATCAAGTTTTATAGAAGTGCTGAATTTTGTTTTAC
TTTTTTTAAGGCATGTGCCACCACCCCCGGCCTGTTTACCTCTCCTAAAT
AATTATTTTGCCCGCACACATAACATTTCCTTGTTGTCTGGCACTGGTGA
TGCACCGCCTTTAATCCCCACTCACTGTTACGCTTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_k05.g1 MSMg01no398_k05.g1 CHROMAT_FILE:
MSMg01no398_k05.g1 PHD_FILE: MSMg01no398_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:26 2005
         (242 letters)



>mm_chr14_65540297_65540938
          Length = 642

 Score =  412 bits (213), Expect = e-119
 Identities = 237/249 (95%), Gaps = 7/249 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagcctgggtgacatctcaaaaacaagaaaccgactatgtcaggaagcaaaggctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 acaagcctgggtgacatctcaaaaacaagaaaccgactatgtcaggaagcaaaggctgaa 253

                                                                       
Query: 61  t-------ggtacctataacatgagccgcaactgtttcatggaggacgacccccagatgg 113
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taacagatggtacctataacatgagccgcaactgtttcatggaggacgacccccagatgg 313

                                                                       
Query: 114 agcaaaccagtggcaccactgtatccctaagctcagcccctgctacgcccaaaagcaagg 173
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 314 agcaaaccagtggcaacactgtatccctaagctcagcccccgctacgcccaaaagcacgg 373

                                                                       
Query: 174 ttgaacgggatgctaaaggaaataaagccaaggtgaaggatgagccacagagaagatctg 233
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 ctgaacgggatgctaaaggaaataaagccaaggtgaaggatgagtcacagagaagatctg 433

                    
Query: 234 caaggctgt 242
           |||||||||
Sbjct: 434 caaggctgt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)