This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-398L03
Chromosome
14 (Build37)
Map Location
124,987,779 - 124,988,024
singlet/doublet
singlet
Overlap gene
Fgf14
,
GA_x5J8B7W4W3R-189177-188236
Upstream gene
Vgcnl1
,
Itgbl1
,
LOC668700
Downstream gene
none
Link
Open Mouse BAC browser
Click to get alignment info.
name
Pcca
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:110821
MGI:97499
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
BC006662
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:223267
MGI:2385008
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
4930594M22Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:654799
MGI:1925478
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tmtc4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70551
MGI:1921050
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Vgcnl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:338370
MGI:2444306
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Itgbl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:223272
MGI:2443439
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668700
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668700
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins
pseudo
: _no_value
name
Fgf14
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14169
MGI:109189
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
GA_x5J8B7W4W3R-189177-188236
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:257817
definition
note
: olfactory receptor GA_x5J8B7W4W3R-189177-188236
pseudo
: _no_value
name
Pcca
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21450240
GeneID:110821
MGI:97499
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: propionyl-Coenzyme A carboxylase, alpha polypeptide
transcript_id
: NM_144844.1
name
BC006662
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21703923
GeneID:223267
MGI:2385008
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cDNA sequence BC006662
transcript_id
: NM_145466.1
name
Tmtc4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142345158
GeneID:70551
MGI:1921050
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane and tetratricopeptide repeat containing 4
transcript_id
: NM_028651.2
name
Vgcnl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:123173781
GeneID:338370
MGI:2444306
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: voltage gated channel like 1
transcript_id
: NM_177393.4
name
Itgbl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21703925
GeneID:223272
MGI:2443439
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: integrin, beta-like 1
transcript_id
: NM_145467.1
name
Fgf14
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46575935
GeneID:14169
MGI:109189
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 14
transcript_id
: NM_207667.1
name
Fgf14
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142367254
GeneID:14169
MGI:109189
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 14
transcript_id
: NM_010201.3
name
Pcca
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21450241
CCDS:CCDS27350.1
GeneID:110821
MGI:97499
definition
EC_number
: 6.4.1.3
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]
GO_function
: GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004658 - propionyl-CoA carboxylase activity [Evidence IMP]
codon_start
: 1
exception
: mismatches in translation
note
: propionyl CoA-carboxylase alpha
product
: propionyl-Coenzyme A carboxylase, alpha polypeptide
protein_id
: NP_659093.1
name
BC006662
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21703924
CCDS:CCDS27351.1
GeneID:223267
MGI:2385008
definition
GO_function
: GO:0003674 - molecular_function [Evidence IEA]
codon_start
: 1
product
: hypothetical protein LOC223267
protein_id
: NP_663441.1
name
Tmtc4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037339
CCDS:CCDS27352.1
GeneID:70551
MGI:1921050
definition
GO_function
: GO:0005488 - binding [Evidence IEA]
codon_start
: 1
product
: transmembrane and tetratricopeptide repeat containing 4
protein_id
: NP_082927.1
name
Vgcnl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:123173782
GeneID:338370
MGI:2444306
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005216 - ion channel activity [Evidence IEA]
GO_process
: GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: voltage gated channel like 1
protein_id
: NP_796367.3
name
Itgbl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21703926
CCDS:CCDS27354.1
GeneID:223272
MGI:2443439
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_process
: GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: with EGF-like repeat domains
product
: integrin, beta-like 1
protein_id
: NP_663442.1
name
Fgf14
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46575936
CCDS:CCDS27355.1
GeneID:14169
MGI:109189
definition
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2; fibroblast growth factor 14, isoform b
product
: fibroblast growth factor 14 isoform b
protein_id
: NP_997550.1
name
Fgf14
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46575905
CCDS:CCDS27356.1
GeneID:14169
MGI:109189
definition
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1; fibroblast growth factor 14, isoform b
product
: fibroblast growth factor 14 isoform a
protein_id
: NP_034331.2
name
4930594M22Rik
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149265370
GeneID:654799
MGI:1925478
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 4930594M22 gene
transcript_id
: XR_035095.1
name
LOC668700
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149265885
GeneID:668700
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins
product
: similar to Btf3 protein
pseudo
: _no_value
transcript_id
: XR_034970.1
clone name
MSMg01-438P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-207H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-398L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359D02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-320G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065F20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-503N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132D18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-319A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-206J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341D01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-174J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-313G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212N24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-046D06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-130C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-301P05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058I15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-145O22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-341K16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-019H04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-057B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047C06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-301D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-016F24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-248D08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-173K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-022P07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-032I11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-114N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-006C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157B11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034I19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-055M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-064C13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-109B12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144A03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-050L05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337K12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257O24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-033D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103L02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169D06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-331J02
singlet/doublet
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plural/unique
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doublet
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doublet
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B6Ng01-039P15
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B6Ng01-035C12
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B6Ng01-275P12
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doublet
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B6Ng01-146H09
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B6Ng01-034E16
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B6Ng01-064H12
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B6Ng01-108J23
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B6Ng01-016M02
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B6Ng01-267N20
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B6Ng01-222F20
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