BAC Information

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BAC

Clone NameMSMg01-398M10
Chromosome14 (Build37)
Map Location 68,554,887 - 68,555,078
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398M10.T7 (MSMg01no398_m10.b1)MSMg01-398M10.TJ (MSMg01no398_m10.g1)
ACCAG498799AG498800
length848770
length of high quality
(start - end)
62 (158 - 219)236 (76 - 311)
definitionCHROMAT_FILE: MSMg01no398_m10.b1 PHD_FILE: MSMg01no398_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:36 2005CHROMAT_FILE: MSMg01no398_m10.g1 PHD_FILE: MSMg01no398_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATTTGCGGGGGGTAAAAGAANCCCAATGCAAAACAAGCCGNGGAANNC
NGAATGTCCCGACAAACACAGAGNCAAGAACAGAGAAAGAATAATAAACG
CATTCATGCCTATTACCATAATGATGCTGTCCACAATCGACTCCATCTTC
CCATATCATAAACATGCAAGACCATACCTCTAGGCATGCTCACCGGCCAC
CCTGCTCTAGACAGAGTCTCTTCCCAGTTGACTCTACATTGCGTTTTGCT
GACTATTATAAGCAACCATCACAACTCCACCCCCTGTCAATTTGAGATGC
CAACACACTATTTTTTTTTTTATGCTCAAGGCCAGACCAGCACACACAAC
GAGTCTCTTAGTAATCTGCCTTACAGAGTGCATTTCTCTTTTGATAGAAT
CATGAATGAACTTTTACTTACACCACCATGTGTACCAAAAGTATAACCCT
CTTCCCTATTCTTTACCTGCTATCGCTCTTGTATCACTCTTGTCCAGTCA
TCGACCATTGACGCTTCCTTATGCCCTACCTATCTCCGTTCCCGCGTACC
AACTCTCTGTTCCTATCATCCCTCCCTATACCTCCCATTTTTATCCCCTT
ATCCAGCCGCCCTTTCCTATACTTTTCCTTACCACCTCTTATCATCCCCT
TTTACTCCTTCCCCCTCTTCTTCTCTCCTTTTTCCCTTCCCACCCCCCCC
CCTTTCCCCCCTTTTCCCATCCTCCCTCTCCGCCTTTATTCCCAATATTC
GCCTCCCCGTACTCCATCTTCCTACCGCTTTTTATAACCTCCCTTTCCCT
TTTCATTATTTTACTCCGCCCCCACATGACACATTTTTTCCCCTTCTG
AATGATGTGGGAGGCCTGGNGGNCGCCTGGTTCANTACTTTAGGNGAACT
ANAGAATTTTCTGAAAAACTCAGGNCAATTAGCCTACCCTGGAAATTCAT
TTCTCTTTGTTTCTTTCTCTGGAGCTCCCACAAGCACAGATGTGAATATT
CTTGTGTGCAAGAGTTGCTGGTATCTTTATGGGCTTTAGACTCTAGATAG
CTGCAATTGTGGAATTAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTATGTTT
TTCTGAAAAGATTCCTAGTTAAAGGAAAAAAAATAATTCTGGGAAACGCG
CTGTTATTCCACCCACCCATCTGGTCAGCTGTCTAATTTTAAACCTCATT
TTAATAACAACACTTTGAATAGCTGTGCTTTTATGATTTAAATGGACTGG
GAATGGAACCATCTGATATCACAAAGTGGGTGGACTTCAGTCTGCAGAGG
GAAAAGAATAAACACACTGGAAGTTTCTTCCATTCTCTCCAACTCTTTTT
ATAAAAGCAATCTACCATTGCTAAGCCCCGAATCTCCAGAGTCCCAATTC
CAAACCTGAAGTTTTTGTAAAGATCAAAGTGTCAATCAATTGCAATGTTT
TTTTATTGAAACCCACTTTCTTCTGATCAAAAGCATTATCCGCCTCCTAC
GCGCTTATTAACTTGAACAAGAGTGAGTTTATAGCACCTCTAACATATCT
CTTGCCATGTCAGTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_m10.g1 MSMg01no398_m10.g1 CHROMAT_FILE:
MSMg01no398_m10.g1 PHD_FILE: MSMg01no398_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:36 2005
         (236 letters)



>mm_chr14_68554734_68555369
          Length = 636

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattagcctaccctggaaattcatttctctttgtttctttctctggagctcccacaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caattagcctaccctggaaattcatttctctttgtttctttctctggagctcccacaagc 286

                                                                       
Query: 61  acagatgtgaatattcttgtgtgcaagagttgctggtatctttatgggctttagactcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acagatgtgaatattcttgtgtgcaagagttgctggtatctttatgggctttagactcta 226

                                                                       
Query: 121 gatagctgcaattgtggaattaatttctctctctctctctctctctctctctctctctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gatagctgcaattgtggaattaatttctctctctctctctctctctctctctctctctct 166

                       
Query: 181 ctctctctctct 192
           ||||||||||||
Sbjct: 165 ctctctctctct 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)