BAC Information

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BAC

Clone NameMSMg01-399C15
Chromosome14 (Build37)
Map Location 82,710,471 - 82,710,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399C15.T7 (MSMg01no399_c15.b1)MSMg01-399C15.TJ (MSMg01no399_c15.g1)
ACCAG499093AG499094
length730730
length of high quality
(start - end)
378 (47 - 424)253 (81 - 333)
definitionCHROMAT_FILE: MSMg01no399_c15.b1 PHD_FILE: MSMg01no399_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:06 2005CHROMAT_FILE: MSMg01no399_c15.g1 PHD_FILE: MSMg01no399_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCATTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGACCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCACTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCTC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTTTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGCGTGTGGGTTCATTCTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGCTTTTACCACAATCG
CTCTGCAGTACAGCTTTAGGTCAGGCATGCCCATTCCACCCGAGGTTCTT
TTTACCATTGACAAGAGCTTTTGCTATCCT
AATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATATTCTTTCTCTATGCT
GGGTCTCTGCTTGGCCTCACTCTGTTCAGGTCATGCACAGTTGTCAATCC
ACATGTACAATTGCCCTGCTTTGCCTGGTGTATGGAGGATATAAAGTAGA
TATTTTGAGAACTTTGGAAAAAAAGCTCTGAAACTTAATCCTGTATTAGG
CCTTATGTAAAGAAGTAAATAATTAAATAAAGAAAAAGAAACTTGAAAGA
ATATACTATAATAAATGAATCCGCATATGCATGTCTAAATATAAAAACCT
TTATGAATATGCTTAAAACTTATAACAATATTACGGCTTCCAGCACTGCA
ACTTTTAATCTGGAGTATAAGTCTCCACCTTCGGTTAAAGTAACGCCAAG
TGTAGAAAAAAAATAAAATCTGCTCACTTTCTCCCTAAGAAATATTATAT
GAGCTCCTTTTGTTGGTTCCTCATACCCTTTTAATTATTTTATATCAGCC
CCATCAAAACACTTACATTGTCCATTAAGACATGTTTGACTCTGCACCTC
ACCTTATCAATTACCACTGTTCATCTTCACTCACATTAAATGCCTGACTA
CCTCAAACATTTCCCACTTTCATTTTTACCTTTTCTCATTCCCCCACCCT
CACTTCCACCATTTTTCCCCTTCTCTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_c15.g1 MSMg01no399_c15.g1 CHROMAT_FILE:
MSMg01no399_c15.g1 PHD_FILE: MSMg01no399_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:06 2005
         (253 letters)



>mm_chr14_82710271_82710923
          Length = 653

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatattctttctctatgctgggtctctgcttggcctcactctgttcaggtcatgcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatattctttctctatgctgggtctctgcttggcctcactctgttcaggtcatgcacag 260

                                                                       
Query: 61  ttgtcaatccacatgtacaattgccctgctttgcctggtgtatggaggatataaagtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcaatccacatgtacaattgccctgctttgcctggtgtatggaggatataaagtaga 320

                                                                       
Query: 121 tattttgagaactttggaaaaaaagctctgaaacttaatcctgtattaggccttatgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttgagaactttggaaaaaaagctctgaaacttaatcctgtattaggccttatgtaa 380

                                                                       
Query: 181 agaagtaaataattaaataaagaaaaagaaacttgaaagaatatactataataaatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagtaaataattaaataaagaaaaagaaacttgaaagaatatactataataaatgaat 440

                        
Query: 241 ccgcatatgcatg 253
           | | |||||||||
Sbjct: 441 ctggatatgcatg 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)