BAC Information

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BAC

Clone NameMSMg01-399C20
Chromosome14 (Build37)
Map Location 11,398,643 - 11,398,787
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399C20.T7 (MSMg01no399_c20.b1)MSMg01-399C20.TJ (MSMg01no399_c20.g1)
ACCAG499102AG499103
length730764
length of high quality
(start - end)
345 (71 - 415)145 (69 - 213)
definitionCHROMAT_FILE: MSMg01no399_c20.b1 PHD_FILE: MSMg01no399_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:07 2005CHROMAT_FILE: MSMg01no399_c20.g1 PHD_FILE: MSMg01no399_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTACGCGGAATT
CTTTGTTCATTTCAGAAACCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGATGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATGAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGTTTATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTACCACCAGGAGATAAGTATGGATCGATTCACATTCT
TCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGCCTGTCTCTATACCAGTACTATGCAGTTTTTAATCACCATTGCCCTG
TATCAAAGCTTTACGTCTGGTATGGTGATTCCACCTGAAATCTTTTATCC
TTGAGAAGACTTTTTGCTATCCTACGTTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCCCAATTCTGATTCCTTTTGGGGAATATTTTTTAATA
TAAAGAGAGTTGGTAAAAATGAAACCAAGAGAAATATTTTTAAAAGAAAA
GCACCTTACCAATGGACTTGAAAGGCAGCTGAGAAATGGCACTGCACACT
GTCATTAAAGTTATAGGGGAGAGGTCTTTAAAAGGCCCCAAGCTGAGCTG
CCCAGTGCAGGTATTATTTTACTCTATTAATGTGCTCTTAATTCAAATTG
GAGAATGTGCTTCTCTACATTAGTTCAATTTACTAGAAACGGGAAAGAGA
AATTATGAATTCTTTAAGTGAGGCAAAGCACATGTAGTCAATGCTGCACT
GTTATCCTCCACCAATTCTGATGCTTCACTGCACCATGATTATAGTTCAC
AAGGGCATGTGCTCAATCCAGGGCCCCACATATGACATCAGCTCTCCCTT
TAACACACACCCTATTTCTCTTACCCACTCCCCTCTCCCACTCTATCTTT
CTTTCCCCACCTATATCTCTTCACAGAAACACCCTCTCTTACAGTGAACG
CCCACCAACATACATGCTTATTGAAAACCGCCTGTAACATTACTCTACCC
GCCCTTTACCTTTCTCTTACACGCAGTTCTGCACTATTTNCCTTCTCCCC
GGGTAGTCTTACCCCCCAATAACCTCCATCTGCCCCTTCTATATACTTTT
GACACCCCCGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_c20.g1 MSMg01no399_c20.g1 CHROMAT_FILE:
MSMg01no399_c20.g1 PHD_FILE: MSMg01no399_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:07 2005
         (145 letters)



>mm_chr14_11398443_11398987
          Length = 545

 Score =  281 bits (145), Expect = 2e-80
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgattccttttggggaatattttttaatataaagagagttggtaaaaatgaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgattccttttggggaatattttttaatataaagagagttggtaaaaatgaaaccaa 260

                                                                       
Query: 61  gagaaatatttttaaaagaaaagcaccttaccaatggacttgaaaggcagctgagaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaatatttttaaaagaaaagcaccttaccaatggacttgaaaggcagctgagaaatg 320

                                    
Query: 121 gcactgcacactgtcattaaagtta 145
           |||||||||||||||||||||||||
Sbjct: 321 gcactgcacactgtcattaaagtta 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)