BAC Information

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BAC

Clone NameMSMg01-399D10
Chromosome14 (Build37)
Map Location 124,869,870 - 124,870,331
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399D10.T7 (MSMg01no399_d10.b1)MSMg01-399D10.TJ (MSMg01no399_d10.g1)
ACCAG499130AG499131
length819746
length of high quality
(start - end)
305 (50 - 354)462 (79 - 540)
definitionCHROMAT_FILE: MSMg01no399_d10.b1 PHD_FILE: MSMg01no399_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:10 2005CHROMAT_FILE: MSMg01no399_d10.g1 PHD_FILE: MSMg01no399_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTCGCCCTGTACCCCATTTTTAATAGGATTGTTTGG
TTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATACTGAATATTAGCC
CTCTATTGGATGTCTTCATAGTATCTTTATTTATAATATCCAGAAAGATC
CTAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAT
ACAATGGAGTGCTACTCAGCTATTAAAAACAATGACTTCATGANATTTGC
AGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTATCCCAGC
CACCAAAGAACACACATGGTATGCACTCACTGATAAGTGGATATTAGTTC
AAAAGCTTGGAATACCCCCAAATATAATTTCACAGACCTTTTTGAATCCT
CTGAAAGAAGGTAAGAACAACTGTGGAAGAAAACTTTCGGTCCCTTTTTC
TAGATTGGAGGAAAAAAATAACTTAATGGGGAAAGAAATTTTGTAAAGTC
CAAAGTTGTGGGATACCATAAACCTGGTAAGTGAAAAGGCCCTTTCCTTC
AAATTTGGTCCCCCCCTCGGGGTTCTCCCATCCCGTGTCGTGGAATACGG
TCCCTTAAAATTTCCAAAATTTGGGTCGGTGAAATGCTAAAAAATAGTCT
TTGTTTGGTACAAAACCCCTTTATATTTCTTTTCTCCTGGGAGGGGTCTT
TCTCCAAAAACCCCGTTCACCAAATGGGGAATTTTTTTTTCCCTCCCTTC
TTACCCTTTGTACCCGTGG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGATTTTCCTAAGTCACTTT
CTTATTTCTCACTACAAGAGATACAGTGCTACTCTGGATTAGAAAGTACA
TGAAAATGGTACTGTAGAAAGAAGGAGATGGTAGGAAGAGGTAAAATGGG
AAATTATGATCCTGGCATTAACAAAAACTAGTTACAAGGTTAACCATAGG
GGAAAATAGAATCACCCTCCCCTTCAAAAGAACAGACATTCCTGTTAAGT
ACAGGTTTCTTACCACACAGCAAGGCAGCTGAAGCAAGGAGGTCTCTACC
AGTACTACCAAGCCTTTATTATACAGACTCCACAGCATAACTAAGTCCAA
ATGAAATGTGAAGCTCTACCCACCACAGAGCAAAGTGTTCCGTGACAGGA
ACAGAAAAACCTTCAGAATACTGCCAGCTGTCAGTGCCTTTTTTACTTAT
TTTGCAGCAGCCACTTTGAAATTATTTAACACCTTGAAATAGTCAGTGAA
AGAGATGGAGATTCTTAGAAGCAGACGCTGAAGCAGCCTCACAAACCAGA
GATTCCTGCCTGCAACCAGCATGCCCTGAACCTGCTTGTGCTTTTTGAGG
ATGAGAATACTCTATATGAGGTGAACTGCCTGGTTATTTCTGCCATCACC
CTCCCAAAGAGTATACACAGAATCTCATTTATGCTTCCTTTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_d10.g1 MSMg01no399_d10.g1 CHROMAT_FILE:
MSMg01no399_d10.g1 PHD_FILE: MSMg01no399_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:10 2005
         (462 letters)



>mm_chr14_124869670_124870531
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgattttcctaagtcactttcttatttctcactacaagagatacagtgctactctgga 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgattttcctaggtcactttcttatttctcactacaagagatacagtgctactctgga 260

                                                                       
Query: 61  ttagaaagtacatgaaaatggtactgtagaaagaaggagatggtaggaagaggtaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagaaagtacatgaaaatggtactgtagaaagaaggagatggtaggaagaggtaaaatg 320

                                                                       
Query: 121 ggaaattatgatcctggcattaacaaaaactagttacaaggttaaccataggggaaaata 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaattgtgatcctggcattaacaaaaactagttacaaggttaaccataggggaaaata 380

                                                                       
Query: 181 gaatcaccctccccttcaaaagaacagacattcctgttaagtacaggtttcttaccacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcaccctccccttcaaaagaacagacattcctgttaagtacaggtttcttaccacac 440

                                                                       
Query: 241 agcaaggcagctgaagcaaggaggtctctaccagtactaccaagcctttattatacagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaggcagctgaagcaaggaggtctctaccagtactaccaagcctttattatacagac 500

                                                                       
Query: 301 tccacagcataactaagtccaaatgaaatgtgaagctctacccaccacagagcaaagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccacagcataactaagtccaaatgaaatgtgaagctctacccaccacagagcaaagtgt 560

                                                                       
Query: 361 tccgtgacaggaacagaaaaaccttcagaatactgccagctgtcagtgccttttttactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccgtgacaggaacagaaaaaccttcagaatactgccagctgtcagtgccttttttactt 620

                                                     
Query: 421 attttgcagcagccactttgaaattatttaacaccttgaaat 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttgcagcagccactttgaaattatttaacaccttgaaat 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)