BAC Information

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BAC

Clone NameMSMg01-399I03
Chromosome14 (Build37)
Map Location 76,735,991 - 76,736,238
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Downstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I03.T7 (MSMg01no399_i03.b1)MSMg01-399I03.TJ (MSMg01no399_i03.g1)
ACCAG499355
length720718
length of high quality
(start - end)
---251 (79 - 329)
definitionCHROMAT_FILE: MSMg01no399_i03.b1 PHD_FILE: MSMg01no399_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:32 2005CHROMAT_FILE: MSMg01no399_i03.g1 PHD_FILE: MSMg01no399_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXX
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCATGTTGGGAAAGGTTA
GATATGACAACAGAAAGCCAAGGAATCGCAAGGGAAACAAAAAATCCTTA
GCTACTTTAGGGGGAGGGAAGGCTAGACTTCTCCAGTTTTTTGCTTTTCT
CTCATTGTTAAAGAGAATATGCACCAAAGTATAGTCTTTCAAGACAATCG
CCCCCAGACAGCAGGGAACTCCTGTGTAGGAGCTGGAGGGACAGGCAGAA
GAGCACTACAAGTCAGCCTTCTTGTATAAAAGGACGCATCAAACCACACC
GCCCTCAAGCACAGCCAGCGTTACTAACCATTATAGCAACCAAACAATAT
GGCACAATATGGCTCCAAGATTCTTAGGCCCAGCCCACAGTAGATACTAC
TGTAATGACACTAACTTGTCTTGGAGTTCTCTGCTATGTTCTTTCCACGG
GCTCGTCCTGCTGATTTCTGGCATCTCCCTCTTGTACATACAAGTCCCTA
TTGTTTTTACAGGTCTTCATCCTCCCCGCTTTCCTCGTTTTGTCTCTGTG
TAATGCCCCATCCCATGATGAAGTGTACCCCCTTGAGCTTATCTGACTCT
CTAGTCGCGCTTTCTTTTTTCTGTTTGCCTGTGGTAACTTCTCTTGCGTG
TTTTGCCCCCTCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i03.g1 MSMg01no399_i03.g1 CHROMAT_FILE:
MSMg01no399_i03.g1 PHD_FILE: MSMg01no399_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:33 2005
         (251 letters)



>mm_chr14_76735791_76736441
          Length = 651

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%), Gaps = 2/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgcatgttgggaaaggttagatatgacaacagaaagccaaggaatcgcaagggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 448 tcatgcatgttgggaaaggttagatatgacaacagaaagccaaggaatctcgagggaaac 389

                                                                       
Query: 61  aaaaaatccttagctactttagggggagggaaggctagacttctccagttttttgctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaaatccttagctactttagggggagggaaggctagacttctccagttttttgctttt 329

                                                                       
Query: 121 ctctcattgttaaagagaatatgcaccaaagtatagtctttcaagacaatcgcccccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctctcattgttaaagagaatatgcaccaaagtatagtctttcaagacaatcgcccccaga 269

                                                                       
Query: 181 cagcagggaactcctgtgtaggagct-ggagggacaggcagaagagcactacaagtcagc 239
           | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 268 cggcagggaactcctgtgtaggagctggga-ggacaggcagaagagcactacaagtcagc 210

                    
Query: 240 cttcttgta 248
           |||||||||
Sbjct: 209 cttcttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)