BAC Information

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BAC

Clone NameMSMg01-399J22
Chromosome14 (Build37)
Map Location 85,490,799 - 85,491,361
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399J22.T7 (MSMg01no399_j22.b1)MSMg01-399J22.TJ (MSMg01no399_j22.g1)
ACCAG499440AG499441
length748746
length of high quality
(start - end)
493 (75 - 567)563 (75 - 637)
definitionCHROMAT_FILE: MSMg01no399_j22.b1 PHD_FILE: MSMg01no399_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:41 2005CHROMAT_FILE: MSMg01no399_j22.g1 PHD_FILE: MSMg01no399_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCG
CGGAATTCTTCTCTTGGCATTCATCAAAGTTTTAAAGGGCTTGATTTTAC
ACACATCGGTATACAGGCAACCACAGCTGCATCGAATCCACGCATACAGC
AGCCACACCATGTACAGAGGGCATTTCATAGCCCTTCTTCCCATGCCTCT
TATATTTTTCTGACCTTCCCCATTCCACTGTTACTTGAGCCTTTGTCGTG
GGGGAAGGGTTAATACAGATGATACAGCTACAGTTGACACTCACAGTTGC
TTATTTTCAGCATTTATCTCTTCTTCATCACTCAGTATAATAATCTTCTC
TGACACATTTGGAATAGCACAAATCTATGGATATAAACAAAATATTTATA
AGGCAGTGTGACAGAATGATCATTTAGAAAATCAATGCCATAAAATTTCC
CCTAGAGCCTATGATTTCCCTCCCTGTAGATTTTTATCACGTTTACACAT
ATGATCTCTTTTGGAGAAGGTCTCAAATAAAGAGATATTTTGGCTATCCT
CATAAATAGCCTTGCCACTACTGTACCAGTTGGCATGTCTTGCTTGACAG
TCTGTTGTAGCACACCAAGCCCAGTGCTACATTAAAAATATTGTTGCCCT
TTCACACTAAGCATACTGCACAGTAAAATCTGGTCATATCAAAGCTAGAA
TTGATGGGGGACATGTATCTTGGACAGTTTCAACACTGATTTTGACTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTAATGGAGAGACTTCCTAGAGAT
TTTTGATCAAGGTAAATGAATACATCAAGGCATTTAAATATTTAAAGAGA
CTAGCGAAGTGTCATTATTATTGAGGACCTAGGACAGCAATAGGTAGAAA
TAGAAGGTGTTATCTTGAATAACTTAAATTGCAACATAAAACTCCAGCTA
CAATATGTATGAATACATATGCCACAATTTGTGAGAAAGGAAAGATCTTT
GTCAGTGTGCCATAGCTATATTATGGTGTCTCTTAATCACAGCTCTTGGA
ATTATGCTTCTCAAATTGATGAGGCTGTGTACTAATTTCTTTCAGTTCAA
TTCTTATTTCTCTAACCGCCACCCTAGAACTTTATTTATCATTATACCTC
TAAGTTAGTACATTTTTATACATCCTTGAATATCATTTTCATATTCCTAA
AATATATTTTCACAGCATTTAAATAAAAAGTACATAGGATAGAAATTCTT
AAGGGTATATGAGTCTGCTTTAATTTTGTTCTGAAATTTGAATAATTAGT
TTAAATATATAATTCTACAGCCAATTTTATTTTATGTCATATTTAGAGAT
TTAGCTTCAAGTGTTCCAGAATATATGATACTAATAAATTATAAGATGCC
AAACAGCACTACTACATTTTGCAGGACAATTGTACCGCACTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_j22.g1 MSMg01no399_j22.g1 CHROMAT_FILE:
MSMg01no399_j22.g1 PHD_FILE: MSMg01no399_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:41 2005
         (563 letters)



>mm_chr14_85490599_85491561
          Length = 963

 Score = 1035 bits (535), Expect = 0.0
 Identities = 556/563 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaatggagagacttcctagagatttttgatcaaggtaaatgaatacatcaaggcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ctttaatggagagacttcctagagatttttgatcaaggtaaatgaatacatcaaggcatt 704

                                                                       
Query: 61  taaatatttaaagagactagcgaagtgtcattattattgaggacctaggacagcaatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 taaatatttaaagagactagcgaagtgtcattattattgaggacctaggacagcaatagg 644

                                                                       
Query: 121 tagaaatagaaggtgttatcttgaataacttaaattgcaacataaaactccagctacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tagaaatagaaggtgttatcttgaataacttaaattgcaacataaaactccagctacaat 584

                                                                       
Query: 181 atgtatgaatacatatgccacaatttgtgagaaaggaaagatctttgtcagtgtgccata 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgtatgactacatatgccacaatttgtgagaaaggaaagatctttgtcagtgtgccata 524

                                                                       
Query: 241 gctatattatggtgtctcttaatcacagctcttggaattatgcttctcaaattgatgagg 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctataaaatggtgtctcttaatcacagctcttggaattatgcttctcaaattgatgagg 464

                                                                       
Query: 301 ctgtgtactaatttctttcagttcaattcttatttctctaaccgccaccctagaacttta 360
           |||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||
Sbjct: 463 ctgtgtactaatttctttcagttcaattcttatttctctaagtgtcaccctagaacttta 404

                                                                       
Query: 361 tttatcattatacctctaagttagtacatttttatacatccttgaatatcattttcatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttatcattatacctctaagttagtacatttttatacatccttgaatatcattttcatat 344

                                                                       
Query: 421 tcctaaaatatattttcacagcatttaaataaaaagtacataggatagaaattcttaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcctaaaatatattttcacagcatttaaataaaaagtacataggatagaaattcttaagg 284

                                                                       
Query: 481 gtatatgagtctgctttaattttgttctgaaatttgaataattagtttaaatatataatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtatatgagtctgctttaattttgttctgaaatttgaataattagtttaaatatataatt 224

                                  
Query: 541 ctacagccaattttattttatgt 563
           |||||| ||||||||||||||||
Sbjct: 223 ctacagtcaattttattttatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)