BAC Information

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BAC

Clone NameMSMg01-399P03
Chromosome14 (Build37)
Map Location 13,599,374 - 13,599,612
singlet/doubletsinglet
Overlap geneCadps
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P03.T7 (MSMg01no399_p03.b1)MSMg01-399P03.TJ (MSMg01no399_p03.g1)
ACCAG499686AG499687
length754743
length of high quality
(start - end)
342 (43 - 384)239 (87 - 325)
definitionCHROMAT_FILE: MSMg01no399_p03.b1 PHD_FILE: MSMg01no399_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005CHROMAT_FILE: MSMg01no399_p03.g1 PHD_FILE: MSMg01no399_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGACGAGGATCCGCGG
AATTCCTTGTTTCTGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGG
GCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGA
TTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTAT
CAGCAGGCGTGTTATACTAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGC
AGTCTCTGTAGGCTAGCTCTCCTCTCTCAGGGAAGGTGTACAGTCTATCT
GGTGCTTTTTCCCCCCCCCGAATTGATTGTCGTACTGTCTTCTAACGCAC
CTTCTCTAGATGCTGCGCCCGCTCTGCCCCGCTTTTTTGCTCCAGTTGTC
CTGTATTTTTATATGTCCCACTTTCCGAACCTTCTTGTGGTTTTTGCCCG
TCTTGTTCGCCTCGTCATACCTCGCCTCTTTTTTATTTTTCTCTCTCCTT
TCTCTCCCCCTTTCATTTTCTCTGATTCCTTTTTTTTACCCTCTCGTCCT
TCTCTGTCCCTTCCGTCTCCTCCCCTCTTTTTCCACCCTCCCCCTTTTTT
GTCTTTTTTTTCTCCCCCCCTCCCCCCTCTCTCTCTCCTTTTATTTTTTT
TCTG
TCTCTTCTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGTTCGGGAA
TTCAAATCACTAGACCCTACACTGTGTGGGTTAGCCCATATTAGCAAGTT
CTGAATAATGCAAGAGACTTTAGCAAATATAATGAAAAGTGATCTGGTAC
GGTTTCTGATCTCATCCTCATGCCTCCATGTGTGCATCCATGTATACATC
CACCACCCAAACACTTGCACACATATAAACACCACACATACACACACATA
TGCAAATTACACACACACACACACACTTTTTCACACTCTCACAAATTCCC
CATAGGAACTGACCTGTCTTTCTGCTTCAGGCGAAACTTGACATGAGTAA
TTATCAAATTACTTTTGGTCTTCCGCCCCCCTTACCATCATGAAGTTTAT
GCATTGGCTTTTGTATATGCCCCCTGTCTATTGTGACTGACCACATCATT
TTCATTATTATTGATCCCTCCTTTGACTTCTTTTATCTGCCCCACTGACT
GACCCCTTTTTTGGCTTTGCCGCAGTACCAGTTTATCTTTATACCTCCTG
TTGGTAATCGTTTACCCCCCTCCGTTTCTTTTTTTGTTCTTCCGTATTTC
ATCACTCCGCTTTATTTTGATTTTTTTCATTCTTCGCCTTCTATCCCTTC
TATAGCATTTCCGTTCATTCGTACCCCTTTACATCCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p03.g1 MSMg01no399_p03.g1 CHROMAT_FILE:
MSMg01no399_p03.g1 PHD_FILE: MSMg01no399_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:05 2005
         (239 letters)



>mm_chr14_13599232_13599870
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagttcgggaattcaaatcactagaccctacactgtgtgggttagcccatattagca 60
           |||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cctgagctcaggaattcagatcactagaccctacattgtgtgggttagcccatattagca 322

                                                                       
Query: 61  agttctgaataatgcaagagactttagcaaatataatgaaaagtgatctggtacggtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttctgaataatgcaagagactttagcaaatataatgaaaagtgatctggtacggtttc 262

                                                                       
Query: 121 tgatctcatcctcatgcctccatgtgtgcatccatgtatacatccaccacccaaacactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatctcatcctcatgcctccatgtgtgcatccatgtatacatccaccacccaaacactt 202

                                                                      
Query: 181 gcacacatataaacaccacacatacacacacatatgcaaattacacacacacacacaca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacacatataaacaccacacatacacacacatatgcaaattacacacacacacacaca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)