BAC Information

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BAC

Clone NameMSMg01-401K08
Chromosome14 (Build37)
Map Location 67,128,055 - 67,128,230
singlet/doubletsinglet
Overlap genenone
Upstream geneElp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K08.T7 (MSMg01no401_k08.b1)MSMg01-401K08.TJ (MSMg01no401_k08.g1)
ACCAG500981AG500982
length741758
length of high quality
(start - end)
243 (79 - 321)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no401_k08.b1 PHD_FILE: MSMg01no401_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:19 2005CHROMAT_FILE: MSMg01no401_k08.g1 PHD_FILE: MSMg01no401_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATAATTTGCGGCCGCAAAACGAANCACTATTTCAAACACATCNGC
GGNAATCNAGCTGGTTTCACACACGCCCTTTCCTGGTTCTCAGACTTCCC
ACAGACTGATCCTCTAGCTTCAGACTGCAGACCATAGGACTCCTCAGCTG
TCAGAATCTATTTTTTAAATTTATTCTTCTCTTATATGATACATCCTGAC
CACACTTCTCCAGCCCCCTCCACTTCTCCCATCCCCTCCCTCTCTACCCC
AGATTCTTACCTCTTACATTTACCTTCAGAAAAGAGCAGGCCTCCCACAG
ACAACAATTGAACATGGCTTAACTGAATACTCAGTAAGACTGTAAAACCT
TCATATCAAAGCTGGGACACGGCAACCCAGTAGAAGGAGAAGGGTCCCAA
GAGCAGGCAACAAAAGAGTCAGAGACAGCCTCACTCCAACACTTAGGAGT
CCCACAAGAACAGCAAGCTATAGAACCATAGCGTATATGCAGAAGGCCTA
GTGCAGACCTGTGCAGGCTCTGCAGCTGCCGCTCGAGTCTCTGAATCCCT
ATGAGCCCTGGCTAAGTTCTGTGTGCTGTGCTCTCTTGGTGTCCTTGACC
TTTCTGTTTCCTACAATCCTTCCTCCCCATCTTCCTCATGATTCTCTCAC
CCAGGCCTATTTGTTTGTTGTGGCGCTCTGCTTCTACTCCCAACAGTTCC
TGACTGACGCCTCTCACATGATTGCCCCGCTAGGCTTTGAT
NAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTGAGGGATACAGAAGAGT
GATGTCATAAGATGCAGAAGCCCTGCCAGCCATGGACTGGGCAGGACAGC
TGGAGGCCACATGAATACTGGGCAGTGATGAAAGGGAAAGGGAAAGTGGT
TAGCTCTAACTTGATTCATAAGAAAAAGCCAGTGCTGCTGGTGAGCCAAT
GGGGGCTCCTCCAATAAGAAGGGCTGGTAGATGAGGCATAGGAAAGGAAA
GCAACATGAAGGAAGCGGGCAATGTGCTTCTCTGGGATTCTACTCCAGCT
AGAAATGAAGCTAAGTGTGGCTAATGCTAACTTTCTCTTTGACTATGATC
ATCAGGTGGGAGCACCATTAGCAACCACAAAACATCCATCTACTGAGCCA
GGATGGCAGGGAGAGGGACCTGATCTGAGCCATGTATGGAACCAGTGACT
AGGTCAGTGTCAGGGCCTCTCCTTTGATGCCTTAGGAATAGACCAATGAC
CAGTGCTTCTCTCTCCCAGCATGTCTTCACGTGGCCTATTGGTTGACATG
GAAATGCCTAAAATGGGCATCTTTTCATGGAGAATGTGAGGGTTGATATC
TCAGGCCATGTGTTTATTAGTTAGACCACTTGAATGCCCACAAAAACTGA
AAGAAACCAGGTTTGGAGGGAAGAATGAAATTTTTGGTAGGAACCCCCCT
AAAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k08.g1 MSMg01no401_k08.g1 CHROMAT_FILE:
MSMg01no401_k08.g1 PHD_FILE: MSMg01no401_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:19 2005
         (247 letters)



>mm_chr14_67127855_67128493
          Length = 639

 Score =  234 bits (121), Expect = 3e-66
 Identities = 166/187 (88%), Gaps = 14/187 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctgagggatacagaagagtgatgtcataag--atgcagaagccctgccagccatgg 58
           |||||| |||||| ||||||||||||||||||||  || ||     | ||||||||||||
Sbjct: 376 tctgctaagggatgcagaagagtgatgtcataagacat-ca----tcatgccagccatgg 322

                                                                       
Query: 59  actgggcaggacagctggaggccacatgaatactgggcagtgatgaaagggaaagggaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 321 actgggcaggacagctggaggccacatgaatactgggcagtgat------gaaagggaaa 268

                                                                       
Query: 119 gtggttagctctaacttgattcataagaaaaagccagtgct-gctggtgagccaatgggg 177
            ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 267 ctggctagctctaacttgattcataagaaaaagccggtgctggctggtgagccaatgggg 208

                  
Query: 178 gctcctc 184
           |||||||
Sbjct: 207 gctcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 639
Length adjustment: 9
Effective length of query: 238
Effective length of database: 630
Effective search space:   149940
Effective search space used:   149940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)