BAC Information

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BAC

Clone NameMSMg01-402A16
Chromosome14 (Build37)
Map Location 56,207,895 - 56,208,191
singlet/doubletsinglet
Overlap genePsme2
Upstream gene4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik
Downstream geneRnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402A16.T7 (MSMg01no402_a16.b1)MSMg01-402A16.TJ (MSMg01no402_a16.g1)
ACCAG501284AG501285
length707763
length of high quality
(start - end)		67 (51 - 117)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no402_a16.b1 PHD_FILE: MSMg01no402_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:49 2005CHROMAT_FILE: MSMg01no402_a16.g1 PHD_FILE: MSMg01no402_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCACCCCAATTAATCTACATTCGCTATACGACTCACTTATGCGAGAGGA
TCCGCGGAATTCCAGGATTGCCAAGGCTACACAGAAAAACCCTGTCTCAA
AAAAACAAAAAACAAAAACATAAAACTTAATAAAAACAACGGAGAGCAGT
GTTGAGGGTGCAGCTCAGTGGTACAGTGCTTGAGTGCTTGCCTATCATAC
TCCGTCCCTGTGTTTCATTCCCCAGTCCTGAATACATTAAACCCCCCCAA
CCACCTAATCTTTCTTAATCAATATTTTCTAACTCTCCTCCCTTATATTG
CCCCCCGCTCCCCCCGGGGTTTGTTCTTAAACCTTTTCAACCCCCTCCCC
TTAACCGTATGCCATCCTATTCCTTTTTTTTTACTCTCTCACCTCCTCCT
TCTTTGCCCCTACTTCTATCTTATCCTTCTTTCTATTTCTCCCCCCCCCT
CATTTCCTCCCCTTTTTTTTACCCATTATCCTTCTTCCCTCTTTTTCTCT
ATTCTTTTTTCTTCCTTCTTCTTTACAATTTCCCTTTTCTACACTCCTTC
TTTTTTCCCTCTTCTTTCTTTTTTTCTTCCCCCCCGCACCATTTTCTTCT
TTCCCCACCCTTTTTTTTCTTTCGTCACTCCCCCGTCTTTTTCCTTCTTT
CATTTCTTTTTTTTCCTACTCTTCTCCTTATTTCTTTTTCCCTTTCCCCT
CCTCCTN

CGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTACATACACGAAATGGAAAACC
TACCTGCACATGCCTGGGTGCACACAAACACACAATTAAAAAGTATATAT
CTAGATATCTAGATATATACACACACACACACATATCCATCCATATATAT
CCAAGACACAAAAGCCAGTCTTATTATATATTAGGTCTCTGGGTTGAAGA
CCTGCATCTCTGACTGGACCACAGCTGTGCTGTGCTTTTCTTCCCACCTC
CCCCAGGGCCCAGGCTCACCAGAATGCACTTCTCTTTGAGAGTCCAGACT
TCTGGCTTAACCAAAGCGAGCAAGGTCAGAAGCTTCTCGTTCCCTGGGAG
GTAGCCACACTTAGGGACTAAGAGAAAGATGAGAGTGGGGTCTTTATGTC
ACCCACATCCCTGTACCAGCCTCCCCCCTCCTCACCAGGTCTCCAATTAC
CTTCCTTCTTCTCCTGCCTGTCCGGTTCCCTCTAAGGTAAAATTATGACA
GCTGCTTTAGAACAGGCTTGGAAGCTGCCCCCCTGCGGCGCTGTTTGCCT
CTGGCCTTACAGATCACGCTCTTGTCCCTTGAATGTTTTACCTCGTTACC
CCCCTGTCGGGAGCGACTCGGGATATTTGTGAGGTCTCTCATCTTCTTCT
CCCTCCACATTACTTTTTTTTCTACCCTCTAGTCTGCTCTTCCTTCCTTG
TATAAATTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_a16.g1 MSMg01no402_a16.g1 CHROMAT_FILE:
MSMg01no402_a16.g1 PHD_FILE: MSMg01no402_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:49 2005
         (297 letters)



>mm_chr14_56207695_56208391
          Length = 697

 Score =  574 bits (297), Expect = e-168
 Identities = 297/297 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatacacgaaatggaaaacctacctgcacatgcctgggtgcacacaaacacacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacatacacgaaatggaaaacctacctgcacatgcctgggtgcacacaaacacacaat 260

                                                                       
Query: 61  taaaaagtatatatctagatatctagatatatacacacacacacacatatccatccatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaagtatatatctagatatctagatatatacacacacacacacatatccatccatat 320

                                                                       
Query: 121 atatccaagacacaaaagccagtcttattatatattaggtctctgggttgaagacctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatccaagacacaaaagccagtcttattatatattaggtctctgggttgaagacctgca 380

                                                                       
Query: 181 tctctgactggaccacagctgtgctgtgcttttcttcccacctcccccagggcccaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctgactggaccacagctgtgctgtgcttttcttcccacctcccccagggcccaggct 440

                                                                    
Query: 241 caccagaatgcacttctctttgagagtccagacttctggcttaaccaaagcgagcaa 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccagaatgcacttctctttgagagtccagacttctggcttaaccaaagcgagcaa 497



 Score = 54.9 bits (28), Expect = 6e-12
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 67  gtatatatctagatatctagatatatac 94
           ||||||||||||||||||||||||||||
Sbjct: 294 gtatatatctagatatctagatatatac 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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