BAC Information

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BAC

Clone NameMSMg01-402N24
Chromosome14 (Build37)
Map Location 51,999,376 - 51,999,891
singlet/doubletsinglet
Overlap geneEG638695, Vmn2r-ps110
Upstream geneOlfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238
Downstream geneLOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N24.T7 (MSMg01no402_n24.b1)MSMg01-402N24.TJ (MSMg01no402_n24.g1)
ACCAG501919AG501920
length737739
length of high quality
(start - end)
428 (133 - 560)516 (80 - 595)
definitionCHROMAT_FILE: MSMg01no402_n24.b1 PHD_FILE: MSMg01no402_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:56 2005CHROMAT_FILE: MSMg01no402_n24.g1 PHD_FILE: MSMg01no402_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAAGGTTTTTCCAAAATAGCTAANAACACTGAANAATCATA
AAATCATTTAAAAACCCTAAAAGAACCCTAAGAAGCTTTTTAAAAAAACC
CTAAAATCCTTAATACAAAACTAAAAATAGAGGTGTCCGCCTGGCTTGGG
AGGCTGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTTAGTTCCGGGACTC
AGCAGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAA
CCGGACAGCTTCTGGAACAGGTGTAAGCACAGAGCTGCTGAGGCAGCACC
CTTGGCGGGCTGCAGACAGCCGGCCACCGTCCGGACCAGAGGACAGGTGT
CCGCCTGGCTTGGGAGGCGGCCTCAGCCTCAGGAGCAGCGGTCGCCACCT
TGGTTCCGGGACTCCCTGGAACTTAGGAATTTAGTCTGCACAGGTGAGAG
TCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACACAGC
TTCTGAGAAAGGNCCTGTTTTGGGCCTTCTTTTTCTGCCAGGAGGACGTC
CAAAAACAAGATATCTGCGCACCTTCCCTGTAAGAGAGCTTGCGCACCCT
TCTCTGTAAGAGAGCTTGCCAGCAAAAAATGCTCTGATACCTGAAACTCC
GAGGAGAGAAACTGTCTTCCCAGGTCCGCTGATATAC
NNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATACAGTGAAAGATTTCA
GGGAACACTGAGTGTAGGGTTATGTATTTATAAAATATCCAACAACACTG
TGGTTTATGAATATATCTTCTCTAAATGTAATAATCTACTTTATATCAAC
ATAGAACCAAAAAATGGTTTAGGAAATCGTTGCTTTTTGAAAAAATTACG
AATGATAAAATCAACAAAGTTAAATAAACAAAGAAATAGATGCTTGGTTT
TATTTTCCCTTAAATCTTTATGTATATTACGAAACAAAAGTAATGTTGTA
CAGTGATGTCCTTCATATTTCATTCTCAGCAGCAGTGCAAGTCTTCTTCC
AACACACTTGAAAACCTTGTCAATAGAATTTCTAAAGTAGCACTAACAAA
CCTTTCCTTTCGACGTCAGATACGGAGCAGTTTGTGAATTGTCCAGGAGA
CCAGTATGCAAACACAGAGCAGAACGAATGCATTCCAAAAGCCGTGATCA
TTCTAGGCTACGGAGACCCCTTGGGGATGGATACTTCCTTAATAGCCTCC
GTTTCTTTGCATTCACAGCTGTGGGACTTTGGGTCTTTGTGAAGCACCAT
GGCACTCCTCTTGTGAAGGCCAATAACAGAATCCTCAGCTACCTATTACT
CATGCCCCTCATGTTCTGTTTTCTGGGCCCCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n24.g1 MSMg01no402_n24.g1 CHROMAT_FILE:
MSMg01no402_n24.g1 PHD_FILE: MSMg01no402_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:56 2005
         (516 letters)



>mm_chr14_51999176_52000091
          Length = 916

 Score =  990 bits (512), Expect = 0.0
 Identities = 515/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatacagtgaaagatttcagggaacactgagtgtagggttatgtatttataaaatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatacagtgaaagatttcagggaacactgagtgtagggttatgtatttataaaatatc 260

                                                                       
Query: 61  caacaacactgtggtttatgaatatatcttctctaaatgtaataatctactttatatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaacactgtggtttatgaatatatcttctctaaatgtaataatctactttatatcaa 320

                                                                       
Query: 121 catagaaccaaaaaatggtttaggaaatcgttgctttttgaaaaaattacgaatgataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagaaccaaaaaatggtttaggaaatcgttgctttttgaaaaaattacgaatgataaa 380

                                                                       
Query: 181 atcaacaaagttaaataaacaaagaaatagatgcttggttttattttcccttaaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaacaaagttaaataaacaaagaaatagatgcttggttttattttcccttaaatcttt 440

                                                                       
Query: 241 atgtatattacgaaacaaaagtaatgttgtacagtgatgtccttcatatttcattctcag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtagattacgaaacaaaagtaatgttgtacagtgatgtccttcatatttcattctcag 500

                                                                       
Query: 301 cagcagtgcaagtcttcttccaacacacttgaaaaccttgtcaatagaatttctaaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcagtgcaagtcttcttccaacacacttgaaaaccttgtcaatagaatttctaaagta 560

                                                                       
Query: 361 gcactaacaaacctttcctttcgacgtcagatacggagcagtttgtgaattgtccaggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcactaacaaacctttcctttcgacgtcagatacggagcagtttgtgaattgtccaggag 620

                                                                       
Query: 421 accagtatgcaaacacagagcagaacgaatgcattccaaaagccgtgatcattctaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accagtatgcaaacacagagcagaacgaatgcattccaaaagccgtgatcattctaggct 680

                                               
Query: 481 acggagaccccttggggatggatacttccttaatag 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 acggagaccccttggggatggatacttccttaatag 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)