BAC Information

Click to search

BAC

Clone NameMSMg01-402P16
Chromosome14 (Build37)
Map Location 116,395,647 - 116,395,911
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P16.T7 (MSMg01no402_p16.b1)MSMg01-402P16.TJ (MSMg01no402_p16.g1)
ACCAG501999AG502000
length782902
length of high quality
(start - end)
265 (53 - 317)65 (74 - 138)
definitionCHROMAT_FILE: MSMg01no402_p16.b1 PHD_FILE: MSMg01no402_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:05 2005CHROMAT_FILE: MSMg01no402_p16.g1 PHD_FILE: MSMg01no402_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTAGAGGATCCGCGG
AATTCTTAATTTACCCCAAAGATGTTCTTTTTGTGGACTGAATCAAGCAT
TAAAGCAGGCTATCACATGATGAGAACCACACTCATCTGGTGAGTAAATA
TACCAGCAACTACAACAGAGGGAAATCATAAAAGAAAAGATTGTCTCACA
AAACAATTACTTTACTAGCCTTAGGTAAAAAAGTAACTGCTACCTACTGG
GGTTACTTATTGTTTTACAGGAAAAGGGTGTTCTTTCCTTTTAAAAATTT
ACTTATATGACTTCAGTTTTTTTATTATGTATCTATAATTGATTTTAAAA
GCAAACCAATAAAGTGCATATCATTCATACTAATTGAATTTTCATTTAAA
AATGTAATGAATGGATGAAGACATATATCCATTGTCTAAGTGTCATTGCT
GCTTCTGTACACGTACTGTCTTATTCCTACCTATCCCAGCCCAGTTTTAG
CTTACTTGATTCCCCCCTTGAACTTCTGTTTATATTTTATAATTATGCGC
ACTATCCACCCCTCCTTGTTTGACCCACCCTCCTTCCGTCCTTTTCCTTA
TATTTCTATTTTACCTACATACACTAATTTCCTCATTTTTCTCCATTCTA
TACCTCGTCTTACTTTTTATTTTCTCCCTTTTCATCCCCTCTCTATTCAC
CCTCCTTTTATCCTTTTTATTTTACTAACTCATATTGATCACAAAATAGC
TTCTCTCTACATCATCCTCTCTCTACGTTTTN
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGGTAAGGTGCAGGAACATTCTTGT
GGAGACGGGGGAAGGGTTAAGCGGGGAGGTATGGGATGTGGAACTATCTG
GCATGATACTGTTCCCCCTACGCCGCTTTCCCCCCCCTCGCCCCCTCCCC
TCCCCTCTCCCTCTCTTTCCACGCACTTCTCCCATCATATTATTCCTCCT
CTTCCCCCCCCCTTTTCCTCCCCCCCCCCCCCCCCCCCCCCTCCTCCTCC
CCCCCCCCTCTTTTCCCCACCCTCTTTTTCCTTCCTCCTTTTTTTTTCCC
CCCTCCCCCTCCTCCCCTTCCTTCCTTCCCCCCCCCCTCTCCTCCCCTCC
CCTTTCCCCCCCCCCCCCCTCCCCCCTCCCCCTTTCTTTTTCCTCTCTCC
TCCCTCCCCCCCCTCCTTTTCCCCCCCCCTCCCCCCTCTCTCTTCTCCTC
TCTCCCCTTCTCCCCCCCTCTTTTCTCTCCCCTCCCCCCCTCCTCCTCCC
CCTCCCCCCCCCCTTTCCTCTCTTCCCCTCCCCCCTTCCCCCCCCTCTCC
TTTCCATCTCTCTCCCCCCTTCCCCCTCCTCCCTCTTCTTCTCCTTCTCC
CTCCTCCTTCCTCCCCTTTTTCCTCCCTCTCCTCTTTTTGTCCCTCCTTC
TCCTTTCCCTTCCCCCCCCTTCTCCCCCCCTCCCCACTCCCCCCCCCCCT
CCCCCCTCCCTCTCCCCCTTTTCTTTCCCCCCCCGCCCTTTTTTCCTCCC
CTCCCTCTTCTCCTCCTCCCTCCTCCCCCCCCTCCTCCCCTTTCCCTCTC
AACTCTTTCCTTTCCCTCGCCTCCTCACCCTTCCCCCCTCCCCTTCTTCT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p16.b1 MSMg01no402_p16.b1 CHROMAT_FILE:
MSMg01no402_p16.b1 PHD_FILE: MSMg01no402_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:05 2005
         (265 letters)



>mm_chr14_116395447_116396111
          Length = 665

 Score =  443 bits (229), Expect = e-129
 Identities = 256/265 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttaatttaccccaaagatgttctttttgtggactgaatcaagcattaaagcaggcta 60
           |||||||||||| |||||||||| |||||| |||||||||||||| ||| ||||||||||
Sbjct: 465 ttcttaatttactccaaagatgtcctttttctggactgaatcaagtatttaagcaggcta 406

                                                                       
Query: 61  tcacatgatgagaaccacactcatctggtgagtaaatataccagcaactacaacagaggg 120
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 tcacatgatgagaaccacacgcatccggtgagtaaatataccagcaactacaacagaggg 346

                                                                       
Query: 121 aaatcataaaagaaaagattgtctcacaaaacaattactttactagccttaggtaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatcataaaagaaaagattgtctcacaaaacaattactttactagccttaggtaaaaaa 286

                                                                       
Query: 181 gtaactgctacctactggggttacttattgttttacaggaaaagggtgttctttcctttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 285 gtaactgctacctactggggttacttattgttttacaggaaaagggtgttctatcctttt 226

                                    
Query: 241 aaaaatttacttatatgacttcagt 265
           ||||||||| |||||||||||||||
Sbjct: 225 aaaaatttagttatatgacttcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)