BAC Information

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BAC

Clone NameMSMg01-403C22
Chromosome14 (Build37)
Map Location 88,356,546 - 88,526,523
singlet/doubletdoublet
Overlap geneLOC100043317, LOC100043780
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C22.T7 (MSMg01no403_c22.b1)MSMg01-403C22.TJ (MSMg01no403_c22.g1)
ACCAG502153AG502154
length800780
length of high quality
(start - end)		424 (41 - 464)445 (70 - 514)
definitionCHROMAT_FILE: MSMg01no403_c22.b1 PHD_FILE: MSMg01no403_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:22 2005CHROMAT_FILE: MSMg01no403_c22.g1 PHD_FILE: MSMg01no403_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,356,546 - 88,356,964)(88,526,079 - 88,526,523)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTCTTGGCTCATTTTGAAACATGATTATATCAACACAGATGGGTAAAAA
GTGGTTTTGAGAATCTTAAATCTGTTATATTTTCATTTATATCCATCTTA
TATAAACTGTGACCATTAACACCTTAGAATGTACACAGAATTGCTACACT
AACACTCATACGATAGAAGACAAACAATATAATGGAATTGTAATAGTACA
GTGGTAACTGTCCCTTCAGACAAACACATTGATTTATCCTATAATATGTG
TATCCAAAATTTAGCAAAATTGACATAAGAATTTCTATTTATGTATATAA
TTAATATTAGTTTAGCTTTAAGTTAAAATATACTAACAATATTTGTATGG
TTCCTGTTATTCTCATTTTTCTCTTATTTATAAAACTTTAGAACAGAATC
TATTATGATTTGGNTTTGTTATTATATATTTATGTCTGGATTATATTATA
CATTTTGAAACTAAATTGAGATTTGTTAAAAATAGCATTTTAATACATTT
TGCAGTTCCTCAAACATTTGTCAGATGNCTTTTAGTACATTGATTTTTTG
CCAGACCAAAATAATATTCTTTTTGATTGACCAAGATTTTTGTTCCTGAA
AAGGACCCATTTTATCCCACCTTCCTGCCTTTTTAAAAAAGGGGAAAAAT
GCTAAATTGGGGCCCTATTTAAAATTCCACCTTTTCCCGCACAAAAGAAA
AAAATAAAGGGCTGGTTTTGTTGGCCTTTTCAACACCTGGGCCCAACCAA


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGGGACAACGCATATCTTGAGCCAGGCCTA
GCAACTAGTCACACCTCACTCTTCTCATCTGAGAGATGGGACTCGTGACC
TAGACAACCCGTGGAACTCCCTTTCGATTCTAAACCCAAATGCACAAATG
TAATTTCGCCATTTTAGGATTGAGCTTAATTTATTGCCTATTTTTCTCAA
GTTGTAGGAAGAAAATGAACTCATTAACTTGGAATTAATCCTCCCATTGT
GCTGTCTTATATCTGGAATGCCAGGCATTGATATGGACATTTTACAAGTA
CTAATTAAACTGAGTTATCTTTATGAGAAGGGCTCCTCCAAAGAAGAGTA
CAATTTAGAACACAAATTCTGAATTAAACTTATATTTTCTCTGTGTTATA
AGGAATAGAATAAATCATATCTCTCAATATGTGTGAACATGTCATATAGT
ATTTACTTGGAAATGGCATTAATTAATAATTACGCAGAGCAAAGCACCTC
CAAAGCCAATGGTTATAGTTAGAAACTACATTTAAGCATTTTTTCATAAT
TCTACTTGGGGATTCTAAATTAAAGAAGGGGTGAAAAATCCCAGCCTGAT
TTTCCGTGGAAACTTGGATTTAACAAAAGCTTGGTTTTAGGCCAAAAAAA
AGCGTTGGCCCCAAATTTTTTTTTGGAAAGGGCCTCCTTTGCGTTCTACC
AACAAAAAAATTGGGTAAAATTATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c22.b1 MSMg01no403_c22.b1 CHROMAT_FILE:
MSMg01no403_c22.b1 PHD_FILE: MSMg01no403_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:22 2005
         (424 letters)



>mm_chr14_88356342_88357165
          Length = 824

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcttggctcattttgaaacatgattatatcaacacagatgggtaaaaagtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcttggctcattttgaaacatgattatatcaacacagatgggtaaaaagtgg 264

                                                                       
Query: 65  ttttgagaatcttaaatctgttatattttcatttatatccatcttatataaactgtgacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttgagaatcttaaatctgttatattttcatttatatccatcttatataaactgtgacc 324

                                                                       
Query: 125 attaacaccttagaatgtacacagaattgctacactaacactcatacgatagaagacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaacaccttagaatgtacacagaattgctacactaacactcatacgatagaagacaaa 384

                                                                       
Query: 185 caatataatggaattgtaatagtacagtggtaactgtcccttcagacaaacacattgatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatataatggaattgtaatagtacagtggtaactgtcccttcagacaaacacattgatt 444

                                                                       
Query: 245 tatcctataatatgtgtatccaaaatttagcaaaattgacataagaatttctatttatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcctataatatgtgtatccaaaatttagcaaaattgacataagaatttctatttatgt 504

                                                                       
Query: 305 atataattaatattagtttagctttaagttaaaatatactaacaatatttgtatggttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atataattaatattagtttagctttaagttaaaatatactaacaatatttgtatggttcc 564

                                                                      
Query: 365 tgttattctcatttttctcttatttataaaactttagaacagaatctattatgatttgg 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttattctcatttttctcttatttataaaactttagaacagaatctattatgatttgg 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_c22.g1 MSMg01no403_c22.g1 CHROMAT_FILE:
MSMg01no403_c22.g1 PHD_FILE: MSMg01no403_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:22 2005
         (445 letters)



>mm_chr14_88525879_88526723
          Length = 845

 Score =  861 bits (445), Expect = 0.0
 Identities = 445/445 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggacaacgcatatcttgagccaggcctagcaactagtcacacctcactcttctcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagggacaacgcatatcttgagccaggcctagcaactagtcacacctcactcttctcatc 586

                                                                       
Query: 61  tgagagatgggactcgtgacctagacaacccgtggaactccctttcgattctaaacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgagagatgggactcgtgacctagacaacccgtggaactccctttcgattctaaacccaa 526

                                                                       
Query: 121 atgcacaaatgtaatttcgccattttaggattgagcttaatttattgcctatttttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atgcacaaatgtaatttcgccattttaggattgagcttaatttattgcctatttttctca 466

                                                                       
Query: 181 agttgtaggaagaaaatgaactcattaacttggaattaatcctcccattgtgctgtctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agttgtaggaagaaaatgaactcattaacttggaattaatcctcccattgtgctgtctta 406

                                                                       
Query: 241 tatctggaatgccaggcattgatatggacattttacaagtactaattaaactgagttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatctggaatgccaggcattgatatggacattttacaagtactaattaaactgagttatc 346

                                                                       
Query: 301 tttatgagaagggctcctccaaagaagagtacaatttagaacacaaattctgaattaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttatgagaagggctcctccaaagaagagtacaatttagaacacaaattctgaattaaac 286

                                                                       
Query: 361 ttatattttctctgtgttataaggaatagaataaatcatatctctcaatatgtgtgaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttatattttctctgtgttataaggaatagaataaatcatatctctcaatatgtgtgaaca 226

                                    
Query: 421 tgtcatatagtatttacttggaaat 445
           |||||||||||||||||||||||||
Sbjct: 225 tgtcatatagtatttacttggaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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