BAC Information

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BAC

Clone NameMSMg01-403E15
Chromosome14 (Build37)
Map Location 13,812,430 - 13,812,956
singlet/doubletsinglet
Overlap genenone
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022
Downstream geneLOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403E15.T7 (MSMg01no403_e15.b1)MSMg01-403E15.TJ (MSMg01no403_e15.g1)
ACCAG502234AG502235
length769760
length of high quality
(start - end)
527 (59 - 585)458 (71 - 528)
definitionCHROMAT_FILE: MSMg01no403_e15.b1 PHD_FILE: MSMg01no403_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:31 2005CHROMAT_FILE: MSMg01no403_e15.g1 PHD_FILE: MSMg01no403_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCCATTT
TTATCTTAGCTTAAATGCCAACATTCCTCTAACCTGAGCTACATGAATCT
ATGTTCCCTAACACTTACAGATGTATTTCCCCTGGATGCTGACACTTGCA
GGAAACAAGGACGTTAGCCTATTTTCCCTGAATAATAATTTAAGGCTTCA
GGATAAGTTTGGAACTACTATAAGTTTGATTGTGGATCAATACATAGAGG
GTGACTTTTCTCCACATAGACTTACTGATAATTCAAAGAGCCAAACTGTC
TTTGGAAAGTCTGGAGATGATGCACTCTGGGGAGAAGACTATGCCCAAAG
ATAGTCTATCTTGGCTAATTCTTCAAACAGAAATTTGTAGGACAGTTTGA
AAGTGTGCTGGCAGCAGAGCTGCAGCTCAGTGGTAAACTATCCTTCCCCA
GCATGCCTAAGGGCCTGGATTCTATCTACATTGCACAAACCACAGTAAAA
ATACAACAGTAGGGCTTACTCCTGAGGGATCAAAGATGGTGCAGATAAGA
TGCTGAGGGTCATGTTGGGTTGTGCCAAGGACTGTAGATCCTGATCAAAG
AGCAATGAAGTCAGCGAGGACATCTATATATGATGTGGTCATGACCTGCT
TGGCTTTTAAAAAAATGTTAATTTGGACTGCTTANAGCATCAATAATGCA
GCTGAAAGTGGAAGCAAAATGACCACCTCACGATCATCCTCCTTCCAGAA
AAAGAATGGCTTCCGGATT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGT
CTGGTGGTTCCTCTTTTTATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCACAAGCTG
GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGCACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCCCAAAGAAACTCACACAATATGTACTCCCTGATAAGTGGTT
ATTTTCCTCCAACCCTAGGAATACCAAGAATTAATATATTATTTGCCTAA
CACATGGAGACCCCCGATAAATGACTAATTAACTCGGGACCCTTTGTTTC
CTTCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_e15.b1 MSMg01no403_e15.b1 CHROMAT_FILE:
MSMg01no403_e15.b1 PHD_FILE: MSMg01no403_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:31 2005
         (527 letters)



>mm_chr14_13812230_13813156
          Length = 927

 Score = 1019 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttaaatgccaacattcctctaacctgagctacatgaatctatgttccctaacacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttaaatgccaacattcctctaacctgagctacatgaatctatgttccctaacacttac 260

                                                                       
Query: 61  agatgtatttcccctggatgctgacacttgcaggaaacaaggacgttagcctattttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgtatttcccctggatgctgacacttgcaggaaacaaggacgttagcctattttccc 320

                                                                       
Query: 121 tgaataataatttaaggcttcaggataagtttggaactactataagtttgattgtggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaataataatttaaggcttcaggataagtttggaactactataagtttgattgtggatc 380

                                                                       
Query: 181 aatacatagagggtgacttttctccacatagacttactgataattcaaagagccaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacatagagggtgacttttctccacatagacttactgataattcaaagagccaaactg 440

                                                                       
Query: 241 tctttggaaagtctggagatgatgcactctggggagaagactatgcccaaagatagtcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttggaaagtctggagatgatgcactctggggagaagactatgcccaaagatagtcta 500

                                                                       
Query: 301 tcttggctaattcttcaaacagaaatttgtaggacagtttgaaagtgtgctggcagcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttggctaattcttcaaacagaaatttgtaggacagtttgaaagtgtgctggcagcaga 560

                                                                       
Query: 361 gctgcagctcagtggtaaactatccttccccagcatgcctaagggcctggattctatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgcagctcagtggtaaactatccttccccagcatgcctaagggcctggattctatcta 620

                                                                       
Query: 421 cattgcacaaaccacagtaaaaatacaacagtagggcttactcctgagggatcaaagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgcacaaaccacagtaaaaatacaacagtagggcttactcctgagggatcaaagatg 680

                                                          
Query: 481 gtgcagataagatgctgagggtcatgttgggttgtgccaaggactgt 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgcagataagatgctgagggtcatgttgggttgtgccaaggactgt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)