Query= MSMg01no403_h18.b1 MSMg01no403_h18.b1 CHROMAT_FILE:
MSMg01no403_h18.b1 PHD_FILE: MSMg01no403_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:47 2005
(473 letters)
>mm_chr14_30239228_30240103
Length = 876
Score = 841 bits (435), Expect = 0.0
Identities = 458/467 (98%), Gaps = 3/467 (0%)
Strand = Plus / Minus
Query: 7 attcttatgatagtgagcactaacatctcagttatttcccccacgaacctagaagatcat 66
|||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 673 attcttatgaaagtgagcgctaacatctcagttatttcccccgcgaacctagaagaccat 614
Query: 67 ccttactctcgaatcccttgtgtgcaccattagtcttctttgatctgagtcacacaactg 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 613 ccttactctcgaatcccttgtgtgcgccattagtcttctttgatctgagtcacacaactg 554
Query: 127 ctccaagagctaagctgttctaattcaaaatagatgaaaaccaccacatgaatggcatct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctccaagagctaagctgttctaattcaaaatagatgaaaaccaccacatgaatggcatct 494
Query: 187 gctggtgtttgctttcctaaagcaatatattttgataaaagataatccaagaaattgtat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctggtgtttgctttcctaaagcaatatattttgataaaagataatccaagaaattgtat 434
Query: 247 gttgatgggtgaatatattaatgatggttattttatcaaggatattaaaattgagcaagt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttgatgggtgaatatattaatgatggttattttatcaaggatattaaaattgagcaagt 374
Query: 307 atgaaaagaagtaaaaaaaaaaaaa---gaagaaaccttggagtagtgatttatctgaag 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 373 atgaaaagaagtaaaaaaaaaaaaaaaagaagaaaccttggagtagtgatttatctgaag 314
Query: 364 agaatgtcaataatttcaaggccattttgggtcttgttcaaatcaaagaacctcaaatgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agaatgtcaataatttcaaggccattttgggtcttgttcaaatcaaagaacctcaaatgg 254
Query: 424 ctgtgagaagaagtttccagaaaatgaactattttcagtgttttggg 470
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 ctgtgagaagaagtttccagaaaatgaactatttccagtgttttggg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 876
Length adjustment: 10
Effective length of query: 463
Effective length of database: 866
Effective search space: 400958
Effective search space used: 400958
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_h18.g1 MSMg01no403_h18.g1 CHROMAT_FILE:
MSMg01no403_h18.g1 PHD_FILE: MSMg01no403_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:47 2005
(417 letters)
>mm_chr14_30019583_30020399
Length = 817
Score = 783 bits (405), Expect = 0.0
Identities = 414/417 (99%)
Strand = Plus / Plus
Query: 1 ttctctgtcacatttgttatggacccttttgatgcttttaggttaaccgagcctttgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgtcacatttgttatggacccttttgatgcttttaggttaaccgagcctttgaca 260
Query: 61 cgttctgggttaaacataaagacagcataatgtgacctcaaagagagaacagaaggtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttctgggttaaacataaagacagcataatgtgacctcaaagagagaacagaaggtagg 320
Query: 121 aatgactgaaaaagcatgctgacatcttatcttgactggaatggttcaaggcagaagtac 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aatgactgaaaaagcatgctgacatcttatcttgactgggatggttcaaggcagaagtac 380
Query: 181 aagtacaacaacttggacatacatggagtctttaaaattagctctgagacaagagctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtacaacaacttggacatacatggagtctttaaaattagctctgagacaagagctcag 440
Query: 241 aacattctttttaacaagaagtatatagacaaaagcattgactagcattcaaatgatggg 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaacctttttaacaagaagtatatagacaaaagcattgactagcattcaaatgatggg 500
Query: 301 tgagtggccagcatcattgagtctattccattcagaaggcaacatgaattccatgtaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtggccagcatcattgagtctattccattcagaaggcaacatgaattccatgtaggt 560
Query: 361 atattttttctgactatttagaagttatcttagcctgtgaatatgagacaaatgtgt 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattttttctgactatttagaagttatcttagcctgtgaatatgagacaaatgtgt 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
