BAC Information

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BAC

Clone NameMSMg01-403N05
Chromosome14 (Build37)
Map Location 118,126,437 - 118,344,652
singlet/doubletdoublet
Overlap geneGpc6, 5730405N03Rik
Upstream genenone
Downstream geneLOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N05.T7 (MSMg01no403_n05.b1)MSMg01-403N05.TJ (MSMg01no403_n05.g1)
ACCAG502644AG502645
length763747
length of high quality
(start - end)
428 (42 - 469)473 (74 - 546)
definitionCHROMAT_FILE: MSMg01no403_n05.b1 PHD_FILE: MSMg01no403_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:15 2005CHROMAT_FILE: MSMg01no403_n05.g1 PHD_FILE: MSMg01no403_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,344,232 - 118,344,652)(118,126,437 - 118,126,909)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCATGTGCACAATTAGGGAGCAGGGTAATTAGTAATTCTATCCAGAG
GGCTTAAAACTAAAAACACAACACGGCCTCTCGGTTTTCATCCCTCTCGA
TGATGATTTTTCCCATGCAGAATGGCCGCTTGCAGCCTCTGCTCTGGCCT
TCAGCGGTGCTCGCTAAAGAGCCGCCGGATATTCATGGCTCCCAGGGAAC
ATCGGCTCCAGGAACCGACACTCAGCAAACAGCACTTAGTGTGCGTCGGG
TGCTTAATAAATATTTGTTGAGTGAACACAAACATGAGCAGCATTGCCAA
TTATCTGCTAAGGGGAGTAAGATTTTTCGAAAAAGCCATCGATTATCTGT
CGGCTGCTGCCATCCGGACTTTTCTTCGGAGAGTCGGAAAGATGTGGGCC
AATTCACTCAGGTCTTTACAACAGAGCAGGGAGGGATCACAAATGATCCT
TCAACCGTCTAAGCAGGATTACAATGAGAAGTCACTGTAGATGTCACTGA
TGGTGTGACTTATGCATGGGTTGGGAGGAGGCTTTCCGGAATTTTATCGG
CGAATCTGGCCTGTGACAAACTTTGAGAATTTAAGTGGACATAAAGTCCT
CTTCCCTTTTTAACGGCCGGGCTATCCTTCCCTGGAGCTTTTCTTTGGGG
TTTGCACTACAAAATATTGCCGGTTCTTCTTGCGTGGCTTCTAACCTTTC
TCGTTTTCCCATC
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTGATATGGTACAAACCCTGCAAAA
CCCTTCATCACAGGGTGTCCACAGAGCCTCTTATCTTTTTTTCTTGGCAT
TCACGGACTTTGAGTAGCATGAGCTGTATTACAGATGAACCTCATCTAAT
GAAAGCTAGCATGCAAAAAAGTTAAGTCAGTGAATTAATTATATCTGAGA
TTTGACTCACACATCAGATGATTAAATATGTGCATTTGAAAGAGTCCCCG
AAGATATTGTAGTTACTTTAAATAATTGTCCAGGGCCTTTTGGCTGAAGT
GACTTTCCTCATGTAGATTGCTTTTGTTATCTTAATTTCTCAGTGTCTTA
ATTTTGTCTGTTTCTGCATTCCCTCCTGTTTAATTCAGTAAACATTTATT
AGAACAGAATCTACAGAAAAACAGGGCTAGAACCTGCAGGGAACGGGACA
GTTATAGAGACAGCCCACTCCCCTTTAGAGGTTGACTATGGGACCTGGAG
ACAGACTCACATGGGCAGCGTGGTGGTTATTACATCAAACTCCTACCCAA
ACACAGATGACCCCGATTCATTTTTGACCTTATCCGTACCCATTAGGTCA
GGCCCCCGAGTACCCAGGCGTAAACCGACGGCCGTGTCCACCTGCCTGTC
CGTATTCCCCTTCGTGGCTCTCTTTCCATCTGGGATCCCTACCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n05.b1 MSMg01no403_n05.b1 CHROMAT_FILE:
MSMg01no403_n05.b1 PHD_FILE: MSMg01no403_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:15 2005
         (428 letters)



>mm_chr14_118344230_118345057
          Length = 828

 Score =  791 bits (409), Expect = 0.0
 Identities = 418/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccatgtgcacaattagggagcagggtaattagtaattctatccagagggctt 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattccaccatgggaacaattagggagcagggtaattagtaattctatccagagggctt 364

                                                                       
Query: 65  aaaactaaaaacacaacacggcctctcggttttcatccctctcgatgatgatttttccca 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 aaaactaaaaacacaacacggcctctcggttttcatccctcttgatgatgatttttccca 304

                                                                       
Query: 125 tgcagaatggccgcttgcagcctctgctctggccttcagcggtgctcgctaaagagccgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcagaatggccgcttgcagcctctgctctggccttcagcggtgctcgctaaagagccgc 244

                                                                       
Query: 185 cggatattcatggctcccagggaacatcggctccaggaaccgacactcagcaaacagcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cggatattcatggctcccagggaacatcggctccaggaaccgacactcagcaaacagcac 184

                                                                       
Query: 245 ttagtgtgcgtcgggtgcttaataaatatttgttgagtgaacacaaacatgagcagcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttagtgtgcgtcgggtgcttaataaatatttgttgagtgaacacaaacatgagcagcatt 124

                                                                       
Query: 305 gccaattatctgctaaggggagtaagatttttcgaaaaagccatcgattatctgtcggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gccaattatctgctaaggggagtaagatttttcgaaaaagccatcgattatctgtcggct 64

                                                                       
Query: 365 gctgccatccggacttttcttcggagagtcggaaagatgtgggccaattcactcaggtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gctgccatccggacttttcttcggagagtcggaaagatgtgggccaattcactcaggtct 4

            
Query: 425 t 425
           |
Sbjct: 3   t 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_n05.g1 MSMg01no403_n05.g1 CHROMAT_FILE:
MSMg01no403_n05.g1 PHD_FILE: MSMg01no403_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:15 2005
         (473 letters)



>mm_chr14_118126237_118127109
          Length = 873

 Score =  899 bits (465), Expect = 0.0
 Identities = 471/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgatatggtacaaaccctgcaaaacccttcatcacagggtgtccacagagcctctta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cactgatatggtacaaaccctgcaaaacccttcgtcacagggtgtccacagagcctctta 260

                                                                       
Query: 61  tctttttttcttggcattcacggactttgagtagcatgagctgtattacagatgaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttttcttggcattcacggactttgagtagcatgagctgtattacagatgaacctc 320

                                                                       
Query: 121 atctaatgaaagctagcatgcaaaaaagttaagtcagtgaattaattatatctgagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctaatgaaagctagcatgcaaaaaagttaagtcagtgaattaattatatctgagattt 380

                                                                       
Query: 181 gactcacacatcagatgattaaatatgtgcatttgaaagagtccccgaagatattgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gactcacacatcagatgattaaatatgtgcatttgaaagagtccctgaagatattgtagt 440

                                                                       
Query: 241 tactttaaataattgtccagggccttttggctgaagtgactttcctcatgtagattgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttaaataattgtccagggccttttggctgaagtgactttcctcatgtagattgctt 500

                                                                       
Query: 301 ttgttatcttaatttctcagtgtcttaattttgtctgtttctgcattccctcctgtttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgttatcttaatttctcagtgtcttaattttgtctgtttctgcattccctcctgtttaa 560

                                                                       
Query: 361 ttcagtaaacatttattagaacagaatctacagaaaaacagggctagaacctgcagggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagtaaacatttattagaacagaatctacagaaaaacagggctagaacctgcagggaa 620

                                                                
Query: 421 cgggacagttatagagacagcccactcccctttagaggttgactatgggacct 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgggacagttatagagacagcccactcccctttagaggttgactatgggacct 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)