BAC Information

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BAC

Clone NameMSMg01-404A24
Chromosome14 (Build37)
Map Location 90,585,749 - 90,710,587
singlet/doubletdoublet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404A24.T7 (MSMg01no404_a24.b1)MSMg01-404A24.TJ (MSMg01no404_a24.g1)
ACCAG502825AG502826
length773765
length of high quality
(start - end)		417 (60 - 476)389 (65 - 453)
definitionCHROMAT_FILE: MSMg01no404_a24.b1 PHD_FILE: MSMg01no404_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005CHROMAT_FILE: MSMg01no404_a24.g1 PHD_FILE: MSMg01no404_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,585,749 - 90,586,165)(90,710,200 - 90,710,587)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAGGACCGCGGGAATCTGAA
ATTTGTCTTGCAATTTGAACACACATGAATTCCATCCTATTGATTGCTTT
AAAAATCTTTTAGAGTTACTGTGAGTTTGTCAGAAATTTGATTAATCTTG
TTAAGAGGGTAGGACAGGAGGGGAATAAAATCTGAAGTGTAAAATAAATA
AATAAGTACATTAAAGTTTAAAAATATACATACCATAGCAATAAATACAG
TGATTTTGATAATGTTCATATTGTGTTTACCATCTTGTTATCCAAATTTA
TTGCTAAATACTGAAATTGTACAAAATGAATAATTTTATTTTTCATTTCA
CTTCTATAATGCTCTTCAGGCAAAGATACCCTACTTGTCTGCCCAGAAAG
CCATGACCAAATGCGACTGAGTCAGTGACCTAAAATAACAGCTCATTTTC
ACTTAATGTCCCAGAAGAAAATACTGCCAGGGTTGGTTTCTGGNGAGCTC
TGGCTTTTATCTTGGTTTTCCTGACTTTATATGTAACTCTCAAGTTAGCT
ATCTGAGGTTCTGGGACTTCCAATTTTCTTCTTAAGGGCCTAGTTTGGGA
GNAGATCCATATTTATATATTTGACATTTAACCTTAAATACTTCCTTAAA
GGCCCCCGGTTCAAAGGATTCCCTTGGGAAGGAGTCTCTTCCCCTGGTCT
TAGGAGGGGGAAATTTTTCCCTGGGCCAAAACTTTTTGGACTTTAACATC
CCCCCCAACTCTAACGGTGTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTATCAGCATCTCTTATATTTCAGATCATTCCTTC
ATATAAATCTTCATGAAACATGGGTGGTTTTCATCTCTGAGAGTGTTAAT
GTCTAGCTGCAGTTTAAAATATTATATTGTGAGCGTTTTATTCAGAAGTC
ACTGCAGTTGATTAATCCTCCAGGAAACTTTGTGGGCAGTGAGTGGAGAT
GAATTCTAATGCTTTTCTGTGAACCTTCTTTATTTTATCAGGTAAACTTG
AAAACTGAATCTAGTATGAATAAACTTATGAGTTAATCCCACAGTGTCAG
AGCTTGTGAGATATAAGATATTAATGTTAACTTTCCATTGTATTAGTAAT
CTTCTGGGAAATATACATGTTTAAAAAATATACTGGCAAATACCACAGCT
CANACATAAAAAGAAATTTCATTCTTTCTTCACATCTGTCAAAGCACATT
AGAAACATGTAAATCATTAAAGCAGCTATATTTTTCCATAGCTTCATTTC
CTGGCTCCGATTTCTTATAGATCACAGAAAAAAAAGCTCCTTATTCCCCA
CTTGCTACTAAAAAACTTGGTTGTAAGATATTTTTTTTTAAACAAGGGGC
ATTGGTGGTTTAAAATTGAAAGGTCCCCCCCCTTTTTATTTTAGAAACCC
TTCCCCTTTTGCCAATTTTTTTCTTAGGGGGGGGGGGGAGGGCTAAATTG
GATTAATAACCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_a24.b1 MSMg01no404_a24.b1 CHROMAT_FILE:
MSMg01no404_a24.b1 PHD_FILE: MSMg01no404_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:35 2005
         (417 letters)



>mm_chr14_90585549_90586365
          Length = 817

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatttgaacacacatgaattccatcctattgattgctttaaaaatcttttagagttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatttgaacacacatgaattccatcctattgattgctttaaaaatcttttagagttac 260

                                                                       
Query: 61  tgtgagtttgtcagaaatttgattaatcttgttaagagggtaggacaggaggggaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgagtttgtcagaaatttgattaatcttgttaagagggtaggacaggaggggaataaa 320

                                                                       
Query: 121 atctgaagtgtaaaataaataaataagtacattaaagtttaaaaatatacataccatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgaagtgtaaaataaataaataagtacattaaagtttaaaaatatacataccatagc 380

                                                                       
Query: 181 aataaatacagtgattttgataatgttcatattgtgtttaccatcttgttatccaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaatacagtgattttgataatgttcatattgtgtttaccatcttgttatccaaattt 440

                                                                       
Query: 241 attgctaaatactgaaattgtacaaaatgaataattttatttttcatttcacttctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgctaaatactgaaattgtacaaaatgaataattttatttttcatttcacttctataa 500

                                                                       
Query: 301 tgctcttcaggcaaagataccctacttgtctgcccagaaagccatgaccaaatgcgactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcttcaggcaaagataccctacttgtctgcccagaaagccatgaccaaatgcgactg 560

                                                                    
Query: 361 agtcagtgacctaaaataacagctcattttcacttaatgtcccagaagaaaatactg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcagtgacctaaaataacagctcattttcacttaatgtcccagaagaaaatactg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_a24.g1 MSMg01no404_a24.g1 CHROMAT_FILE:
MSMg01no404_a24.g1 PHD_FILE: MSMg01no404_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:35 2005
         (389 letters)



>mm_chr14_90710000_90710788
          Length = 789

 Score =  750 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcagcatctcttatatttcagatcattccttcatataaatcttcatgaaacatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctatcagcatctcttatatttcagatcattccttcatataaatcttcatgaaacatggg 529

                                                                       
Query: 61  tggttttcatctctgagagtgttaatgtctagctgcagtttaaaatattatattgtgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggttttcatctctgagagtgttaatgtctagctgcagtttaaaatattatattgtgagc 469

                                                                       
Query: 121 gttttattcagaagtcactgcagttgattaatcctccaggaaactttgtgggcagtgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gttttattcagaagtcactgcagttgattaatcctccaggaaactttgtgggcagtgagt 409

                                                                       
Query: 181 ggagatgaattctaatgcttttctgtgaaccttctttattttatcaggtaaacttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggagatgaattctaatgcttttctgtgaaccttctttattttatcaggtaaacttgaaaa 349

                                                                       
Query: 241 ctgaatctagtatgaataaacttatgagttaatcccacagtgtcagagcttgtgagatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgaatctagtatgaataaacttatgagttaatcccacagtgtcagagcttgtgagatat 289

                                                                       
Query: 301 aagatattaatgttaactttccattgtattagtaatcttctgggaaatatacatgtttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagatattaatgttaactttccattgtattagtaatcttctgggaaatatacatgtttaa 229

                                       
Query: 361 aaaatatactggcaaataccacagctca 388
           ||||||||||||||||||||||||||||
Sbjct: 228 aaaatatactggcaaataccacagctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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