BAC Information

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BAC

Clone NameMSMg01-404G05
Chromosome14 (Build37)
Map Location 66,355,969 - 66,519,482
singlet/doubletdoublet
Overlap geneScara5, Pbk, Esco2, Ccdc25
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600
Downstream geneScara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G05.T7 (MSMg01no404_g05.b1)MSMg01-404G05.TJ (MSMg01no404_g05.g1)
ACCAG503069AG503070
length763781
length of high quality
(start - end)
348 (65 - 412)303 (68 - 370)
definitionCHROMAT_FILE: MSMg01no404_g05.b1 PHD_FILE: MSMg01no404_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:02 2005CHROMAT_FILE: MSMg01no404_g05.g1 PHD_FILE: MSMg01no404_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,355,969 - 66,356,316)(66,519,182 - 66,519,482)
sequence
TATCCGTCCGAGAAAGGAAGGACATTTCCCAAAGGACCGNGGAATTCAGC
ATGTACACAAGAGTCTCCGCCACACCGGAGCCTCTCCCGGGAGGTAGTCC
CATCCATAAGTAATTAGACACTTATCCTCCACCCAGGTGCCCCGCTGAAA
CCTAAGCTTAGCTAGGCCTCCTTCTTCACTGCGTCCCCAGAGGGAGCCAA
CAGCCATCCTACATTCTAAACAGTCTAGCTGTTCCTTCTGTCTCCGATGG
CCCCTTTCCTAACCCAGGGTTCCTCCACCTCCCACTCGATGGACCACAGC
CCCTGCCTTTCTTCTTCTTTCTGTTCTGTCTTTCTCTCACACCACAACCC
AGCCATCTTCTTCCCTTTGTTGTGCGCAGACCTGATGTGGCTTTCCTACC
AGGCCCCTTCCAACCTCGTACCTACCTGGTCTGAGTCCAGCTCAGCACCT
CAGCCTCCATTACTCCCGCTTTCCCAGTCCACCTGAACTTCTGTTGCTCC
GTTCACCTTATTTTAAACTGCTGCACCGCTGCTTTCATTTTCTTGTTGGA
TAGCTCCCTCTGCTAGTGATTTCTCCTTCATCCTTTAGACTCCGGCATTT
ATTGACATATCGAAATAATATCTTTCTTCTTTTTATTCTACTTCACCATA
TTTTCCTTTCTTTCCAGTTGACAACGCACACCCCTTCTCCTATTTTTCTT
TATAACCCACCTCTCTTACCCCCTTTTCTTTTTTCCCCCACCCCCTTTTA
TTTCCTTTCTTTA
TATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCTCTGCCTTTTGCAGGTACTTAAATCTTTG
CTCACCTCAGCCAAGTTCTCCTACCCTATCGCTTTCCCACATCTGATCAC
AGATTCCCCTCCCCCTGCCAGGTGACTCAGCTTTCCCGTAGGGGCTTACA
ATGAAGGACTCTTAAAATAACCCCAATCCCAAGAAATCAATGTTGGCTCA
TGAGTCTGCTTCCCACTTTAGTTTCTGACCTTCATGCCAAAATCACTTTC
CTCTTTCTCTCTGTTTCTCTGTCTCTGTCTCCCCCACTCCCCTCCCCTTT
CTCCTCCTCAGTCTCCAGCAACATGCTGCCAGATTCATTCCATAGAAACG
ATCCCCAGACCCCTCTGAAAATTCTGGCTGTAGTGTTGCTTATTTGTGAT
TCCCGCATTGACAGAGTGTTTTTCGGTATACTCCTCCCTTTTTAATCTCC
CTGATTTTTCTTCTATTCATAGCCCTCTCCCGCCTTCTTTTTCAATGTAC
AATCCTCCCTTTTTAAACTCCCTTCTTATTTTTTTTTCTGCCCCCTCTCT
TGTCTTTTCATTTTAATTCCCCCCCCTCCCTCTTTATATTCCCCCTCTCC
TTATTCTCATATCTTTTTCTCTTTTCTTTTTCCTTTTTTTTACTCTTCTT
CCCCCCTTCTTTTTCCCTTTTTTCTTCTTTCTTTCTCTTTATTTTTCTCC
CCTCTCTTTTTTCTTTCTCTTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g05.b1 MSMg01no404_g05.b1 CHROMAT_FILE:
MSMg01no404_g05.b1 PHD_FILE: MSMg01no404_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:02 2005
         (348 letters)



>mm_chr14_66355769_66356516
          Length = 748

 Score =  627 bits (324), Expect = 0.0
 Identities = 342/348 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccgccacaccggagcctctcccgggaggtagtcccatccataagtaattagacactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccgccacaccggagcctctcccgggaggtagtcccatccataagtaattagacactta 260

                                                                       
Query: 61  tcctccacccaggtgccccgctgaaacctaagcttagctaggcctccttcttcactgcgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tcctccacccaggtgccccgctgaaacctaagcttagctaggcctccttcttcacttcgt 320

                                                                       
Query: 121 ccccagagggagccaacagccatcctacattctaaacagtctagctgttccttctgtctc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccccagagggagccaacagccatcctacattctaaacagtctggctgttccttctgtctc 380

                                                                       
Query: 181 cgatggcccctttcctaacccagggttcctccacctcccactcgatggaccacagcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgatggcccctttcctaacccagggttcctccacctcccactcgatggaccacagcccct 440

                                                                       
Query: 241 gcctttcttcttctttctgttctgtctttctctcacaccacaacccagccatcttcttcc 300
           |||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gcctttcaccttctttctgttctgtctttctctcacaccacagcccagccatcttcttcc 500

                                                           
Query: 301 ctttgttgtgcgcagacctgatgtggctttcctaccaggccccttcca 348
           ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ctttgttgtgcgcagacttgatgtggctttcctaccaggccccttcca 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no404_g05.g1 MSMg01no404_g05.g1 CHROMAT_FILE:
MSMg01no404_g05.g1 PHD_FILE: MSMg01no404_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:03 2005
         (303 letters)



>mm_chr14_66519050_66519752
          Length = 703

 Score =  559 bits (289), Expect = e-164
 Identities = 298/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   tctctgccttttgcaggtacttaaatctttgctcacctcagccaagttctcctaccctat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctctgccttttgcaggtacttaaatctttgctcacctcagccaagttctcctaccctat 374

                                                                       
Query: 63  cgctttcccacatctgatcacagattcccctccccctgccaggtgactcagctttcccgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 373 cgctttcccacatctgatcacagattcccctccccctgccaggtgactcagctttccggt 314

                                                                       
Query: 123 aggggcttacaatgaaggactcttaaaataaccccaatcccaagaaatcaatgttggctc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggggcttacaatgaaggactcttaaaataaccccaatcccaagaaatcaatgttggctc 254

                                                                       
Query: 183 atgagtctgcttcccactttagtttctgaccttcatgccaaaatcactttcctctttctc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgagtctgcttcccactttagtttctgaccttcatgccaaaatcactttcctctttctc 194

                                                                       
Query: 243 tctgtttctctgtctctgtctcccccactcccctcccctttctcctcctcagtctccagc 302
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tctgtctctctgtctctgtcttccccactcccctcccctttctcctcctcagtctccagc 134

            
Query: 303 a 303
           |
Sbjct: 133 a 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)