BAC Information

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BAC

Clone NameMSMg01-404K03
Chromosome14 (Build37)
Map Location 51,064,313 - 51,064,561
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739
Downstream geneOlfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K03.T7 (MSMg01no404_k03.b1)MSMg01-404K03.TJ (MSMg01no404_k03.g1)
ACCAG503254AG503255
length745782
length of high quality
(start - end)
249 (65 - 313)248 (65 - 312)
definitionCHROMAT_FILE: MSMg01no404_k03.b1 PHD_FILE: MSMg01no404_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005CHROMAT_FILE: MSMg01no404_k03.g1 PHD_FILE: MSMg01no404_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATTCATAA
AAAATTACATTTTAAAGAGCTGGGAAAAGGTGCTGTAATGTGACTAGACA
GCAAGGAGAATCGGCACCGAAGCTGATATCCACACGAGGTAAATTGAGAT
GGATCAAGTCCTTAGAAGACAGTGTTACAATGTGCAAGTATCATGACCAT
TCATTTTGAGTTTACACTACACTAAAATAGAAGGTTCTCCCTGGTTCTAG
ATTAAGGGTAAGGATGAAAAGCAAGGCAGTTTTCTAGAATCAAAATTACC
CAAGAATGTTCTTGCTTTTTTACAAGAGAAAGAATTTTATATAAAAAGAG
TATATGAAGAAATTTAACTGCTTTGACATTACAACTGAAACTTGAAAACA
CTCATAAAAATCTCATGTACAAGACAGTGATGAGAGCCAATAATAACTGG
GACATCAATAACTATGATCAGTTGGGCCATTAAGAAGTAATCTTCATTGG
GACCACCACTCCTATTACACATAATATGTACCGAGGGTAGTTCACTTTCT
AATATCCCAGACTTACTTCTGTATGGTGACACTGATGCTAAGTATGTCTT
GTTTATTCCGCATTCATCTATTGATTGACACCATTATCTACTTTCTACCT
TTTGTTTTGTTCTCTTGCTTCTTCAAATTTTTTTTTTTTTCCCACCTCCT
TGCTATTTTTTTCTTTTTCCCACCCCCTTTCTATTTTTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTTTTTAATGCGGTT
ATTTGATTTTCTAGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA
TTAATCCCCTATCTGATTTAGGATGCCGGTGCCTGGCAAACACAGAGGTG
GATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCCCAGTGTATGAA
CTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATTGGGGGA
ACAACAATATTTTTTATTCTGGACCCCCAGAGCTCATGTCTCTAGCTGCA
TATGTAGCAGAAGATGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTT
GGTCTTGCAAACTTGATATGCCTCAGTACAGGGGAACACCAGGTTCCAAG
AAGTGGGAGTGGGTGTGTAATTTATTGTTCTTTCTTCTCCCCTTTTTTAT
CTCCTCTCTTTTTTTTTTTTTATATTTCACCCCTTCTTTTTTTTTTTTCC
TTCTTCCTTCCCTTCTTTTTTCCTCCTTCCTCTTATTTTTTTTCCCCCCT
CCTCTCTTTTTTCTATTTTTTTTCTCCCCCCTCTTTTTTTAATTCCCCTC
CACATAATAATTTTTTCTTTTCCTTATCTTTCTTCCTAATTATTCTCCCT
TTACTCTCACTCAATCTTATTCTTCTTTCCTATTTCTCCTTTCTTTTATC
TTCCCCTCATTGTCTCCATTTTTTTTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k03.b1 MSMg01no404_k03.b1 CHROMAT_FILE:
MSMg01no404_k03.b1 PHD_FILE: MSMg01no404_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:22 2005
         (249 letters)



>mm_chr14_51064113_51064761
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagctgggaaaaggtgctgtaatgtgactagacagcaaggagaatcggcaccgaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagagctgggaaaaggtgctgtaatgtgactagacagcaaggagaatcggcaccgaagct 390

                                                                       
Query: 61  gatatccacacgaggtaaattgagatggatcaagtccttagaagacagtgttacaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatatccacacgaggtaaattgagatggatcaagtccttagaagacagtgttacaatgtg 330

                                                                       
Query: 121 caagtatcatgaccattcattttgagtttacactacactaaaatagaaggttctccctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caagtatcatgaccattcattttgagtttacactacactaaaatagaaggttctccctgg 270

                                                                       
Query: 181 ttctagattaagggtaaggatgaaaagcaaggcagttttctagaatcaaaattacccaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 269 ttctagattaagggtaaggatgaaaagcaaggcagttttctagaatcaaaattaaccaag 210

                    
Query: 241 aatgttctt 249
           |||||||||
Sbjct: 209 aatgttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)