Query= MSMg01no404_n06.b1 MSMg01no404_n06.b1 CHROMAT_FILE:
MSMg01no404_n06.b1 PHD_FILE: MSMg01no404_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:37 2005
(270 letters)
>mm_chr14_12587831_12588500
Length = 670
Score = 362 bits (187), Expect = e-104
Identities = 231/265 (87%), Gaps = 33/265 (12%)
Strand = Plus / Plus
Query: 4 ggaattccctaatt-tccaccttcactatccctgacttgtggttttcctgagaaaactac 62
|||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctaattat-caccttcactgtccctgacttgtggttttcctgagaaaactac 262
Query: 63 acactgacctccaagaagaaaaaagccggctagccagtgctcttaaccatcaggttttgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acactgacctccaagaagaaaaaagccggctagccagtgctcttaaccatcaggtt---- 318
Query: 123 ctagccagtgctcttaaccatcaggttttggctagccagtgctcttaaccatcaggtttt 182
|| |||||||||||||||||||||||||||||||
Sbjct: 319 ct---------------------------ggctagccagtgctcttaaccatcaggtttt 351
Query: 183 ggctagccagtgctcttcaggcaaatgctcttactagggtctgtgtggcagggtcggggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggctagccagtgctcttcaggcaaatgctcttactagggtctgtgtggcagggtcggggg 411
Query: 243 tagaggcggggaggggggaggaaga 267
|||||||||||||||||||||||||
Sbjct: 412 tagaggcggggaggggggaggaaga 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_n06.g1 MSMg01no404_n06.g1 CHROMAT_FILE:
MSMg01no404_n06.g1 PHD_FILE: MSMg01no404_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
(389 letters)
>mm_chr14_12756675_12757463
Length = 789
Score = 669 bits (346), Expect = 0.0
Identities = 376/392 (95%), Gaps = 12/392 (3%)
Strand = Plus / Minus
Query: 4 ttcatggcaagacagctgactgtatgagcagaaaatttatcgttggagacaaggtgagac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttcatggcaagacagctgactgtatgagcagaaaatttatcgttggagacaaggtgagac 530
Query: 64 aaagacttcagttccaactgttcacaaagaaactgagtcacatgtccaagataaatatga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaagacttcagttccaactgttcacaaagaaactgagtcacatgtccaagataaatatga 470
Query: 124 caccctgagacagtgtgttgaagacatatacagggttcccactgtctgcaaagcgacaga 183
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 caccctgagacagcgtgttgaagacatatacagggctcccactgtctgcaaagcgacaga 410
Query: 184 tctgctgggaacaaggctgaaatgccaaattcagggtacattctagagcagaaaggcaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tctgctgggaacaaggctgaaatgccaaattcagggtacattctagagcagaaaggcaat 350
Query: 244 g----agttttttt--atcggaagaggatggttgaaactcaggaggaatacagtgaggtc 297
| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagcaag------tgaagcggaagaggatggttgaaactcaggaggaatacagtgaggtc 296
Query: 298 gcaggaggtgcaactggagctgatactccaggacagggtgctggagaggaaccctcagcc 357
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 295 gcaggaggtgcaactggagctgatgctccaggacagggtgctggagaggaaccctcagcc 236
Query: 358 gcgtcctggtgactgtctagaggtaagcagta 389
||||||||||||||||||||||||||||||||
Sbjct: 235 gcgtcctggtgactgtctagaggtaagcagta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
