BAC Information

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BAC

Clone NameMSMg01-405B19
Chromosome14 (Build37)
Map Location 55,216,536 - 55,216,995
singlet/doubletsinglet
Overlap gene4931414P19Rik
Upstream geneLOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub
Downstream genePsmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405B19.T7 (MSMg01no405_b19.b1)MSMg01-405B19.TJ (MSMg01no405_b19.g1)
ACCAG503620AG503621
length816781
length of high quality
(start - end)
246 (72 - 317)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no405_b19.b1 PHD_FILE: MSMg01no405_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:00 2005CHROMAT_FILE: MSMg01no405_b19.g1 PHD_FILE: MSMg01no405_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXAAATGCGAAGAATCCGCGGA
ATTCTATAAATTCCTATCAGGAATTATGAAATCATCAATTAGTCTATACA
ACATTACTACATGAGAGTGCATTTTCATGTTGATCTGCAAGAAATTTGCC
AAATACAGTTGGGTGGACTAATGCCCAGGAATCATCGGGCTACGTAACAG
TGGCAGGAAAGGCACATCAGCAGTGAGAAGCAATGCTGGGATGAGGTCTC
TGAGGACACTGCATCTCAGAGTGCACCCACTGCAGTCATGCAAAACAGTG
GGCCATCTCCAGAAAATTCATTTTCTTGCCATAGCCTTTCCTAGATGGCT
TCTGACAGAGAAGGAGGAGCAAGAAGAGGAGGAAGAGGAAAAAGAGGTAG
AGGAGGAAGACGCTTCCTTTCTTTTTTTTATATCTTTTTTCTTTTCCTAA
CTCTTCTTCTTCTCTCCCCCCCCTTTTTTTTTTTTTTTTTTCTTTTTCTC
TTCCCCTCTTTTTCTTCTTCCTCCTTTTCTACCTTTTCCTTTTCTCATCC
TTTATTTCCCTTTACATCTTTTTTCTCCCCCTTTTTCTCTCCCTTCTTTT
TTTTATTCTATCTCTCTTCCTTTTTTTCTCCTTCTACTACTTTTTTCACT
CTTCCCCTCCCCACGCGACACTATCATTTTTTCTTTTACTCTTACCCTAG
TGTTACAAAACTCATACTCCCTNTCTCCACTTCTTTACCTTTTCTTTTAC
ACCCTCCCACACTTGTCGTGTCCCTGCCGCCCCCTTTTCCCCTCTTCCTT
ATTCTATTCTCCCCCG
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACATCCATGGCTCCATAGCAAGAC
CCAGTCTTAGAAACAAAAGCGTGCTGTGGCAGTGGCTCGCTGGCTAAAAC
ACTTGCTGTTCTTGCAGAGGACCCAGGCTTGATTCCTAGCACCCACAGGG
AGGCTCACCACCTTCTGTAACTCCAGGTCCAGACCCTCCCAAGACACAGA
CCTACACGCAGGCAAAACACCCATACTCACAGAAGAAAATAATAAGAAGG
AAAATTAGAACTAATAAACTTAAAGTGAGCAGGCTGATTAAAAAAGAACC
AAGAATTCAATATATAGCAAATTCATTTTAATTATGATGCTATGGTAAAT
TATAGTGTAAAATGGAAATGTATTTGTCAGGGAATTTGTAAATACACTTT
AGATTTTGTCATTTACAGAGCTTCAGGCTGAAACATTCTTTTCCTGTAAT
CAAACATCATTTAGAAAATACCAATATTTAAGTTCCTTGGTGCGTTCTCA
GTGATTCGGAACCTCCTAGTCCCCAGCCCTCCGCTCCTGTAGTAGTTTAG
GTACTTAAATAGGGTATTCCACATAGAGGCAGCGTGGTTTTATGCTGGCC
TTCCCGTTTTTTTCCTGCTAGGCTGGCTTTCCTTTGCCTATCTATACCTA
TATTATTCCTGTCTGTAATTCGCCTCCCTCCCTTTATTGGCTCCCCTCTA
TTTGTATATGTTATCCTTGTTCCCACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_b19.g1 MSMg01no405_b19.g1 CHROMAT_FILE:
MSMg01no405_b19.g1 PHD_FILE: MSMg01no405_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:00 2005
         (460 letters)



>mm_chr14_55216177_55217036
          Length = 860

 Score =  866 bits (448), Expect = 0.0
 Identities = 457/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacatccatggctccatagcaagacccagtcttagaaacaaaagcgtgctgtggcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aggacatccatggctccatagcaagacccagtcttagaaacaaaagcgtgctgtggcagt 760

                                                                       
Query: 61  ggctcgctggctaaaacacttgctgttcttgcagaggacccaggcttgattcctagcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggctcgctggctaaaacacttgctgttcttgcagaggacccaggcttgattcctagcacc 700

                                                                       
Query: 121 cacagggaggctcaccaccttctgtaactccaggtccagaccctcccaagacacagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cacagggaggctcaccaccttctgtaactccaggtccagaccctcccaagacacagacct 640

                                                                       
Query: 181 acacgcaggcaaaacacccatactcacagaagaaaataataagaaggaaaattagaacta 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 639 acacgcaggcaaaacacccatacacacagaagaaaataataagaaggaaaattagaacta 580

                                                                       
Query: 241 ataaacttaaagtgagcaggctgattaaaaaagaaccaagaattcaatatatagcaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ataaacttaaagtgagcaggctgattaaaaaagaaccaagaattcaatatatagcaaatt 520

                                                                       
Query: 301 cattttaattatgatgctatggtaaattatagtgtaaaatggaaatgtatttgtcaggga 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 cattttaattatgatgctatggtaaattacagtgtaaaatggaaatgtatttgtcaggga 460

                                                                       
Query: 361 atttgtaaatacactttagattttgtcatttacagagcttcaggctgaaacattcttttc 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atttgtaaatacactttcgattttgtcatttacagagcttcaggctgaaacattcttttc 400

                                                   
Query: 421 ctgtaatcaaacatcatttagaaaataccaatatttaagt 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgtaatcaaacatcatttagaaaataccaatatttaagt 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)