Query= MSMg01no405_j15.b1 MSMg01no405_j15.b1 CHROMAT_FILE:
MSMg01no405_j15.b1 PHD_FILE: MSMg01no405_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
(505 letters)
>mm_chr14_14817394_14818298
Length = 905
Score = 890 bits (460), Expect = 0.0
Identities = 493/512 (96%), Gaps = 15/512 (2%)
Strand = Plus / Plus
Query: 1 taacagcaaaagcattcctttggtaggtagggtattgggcctgtaagcctcccttctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacagcaaaagcattcctttggtaggtagggtattgggcctgtaagcctcccttctctt 260
Query: 61 cagtcagctttgtgactctttcctttcctatcaaaacaaaacaaaaatactgtatgagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtcagctttgtgactctttcctttcctatcaaaacaaaacaaaaatactgtatgagta 320
Query: 121 caggaatgtaaatgtagttctcaccccttcttcctcagtgttgctgtgtggaaaggcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaatgtaaatgtagttctcaccccttcttcctcagtgttgctgtgtggaaaggcttt 380
Query: 181 ttttttttttctggtgagatgcaacataggtctactcaccccagatagtgatgccacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttttctggtgagatgcaacataggtctactcaccccagatagtgatgccacacc 440
Query: 241 agaccaaa-------ttttttttaccaccgaagtcaaactaaatgaaccaatacgtttta 293
|||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaccaaagcacacat-------accaccgaagtcaaactaaatgaaccaatacgtttta 493
Query: 294 ttgggattacttacgggacagaaatgactcaaagacagctatatcatcaaaatccacgcc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgggattacttacgggacagaaatgactcaaagacagctatatcatcaaaatccacgcc 553
Query: 354 agttgggctggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtcca 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggttgggctggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtcca 613
Query: 414 gagttcaaatcccagcaaccacatggtggctcacaaccatccgtaacgagatctgactcc 473
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 614 gagttcaa-tcccagcaaccacatggtggctcacaattatccgtaacgagatttgactcc 672
Query: 474 ctctttctggagtgtctgaagacagctacagt 505
||||||||||||||||||||||||||||||||
Sbjct: 673 ctctttctggagtgtctgaagacagctacagt 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_j15.g1 MSMg01no405_j15.g1 CHROMAT_FILE:
MSMg01no405_j15.g1 PHD_FILE: MSMg01no405_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
(559 letters)
>mm_chr14_14946543_14947502
Length = 960
Score = 1013 bits (524), Expect = 0.0
Identities = 551/560 (98%), Gaps = 1/560 (0%)
Strand = Plus / Minus
Query: 1 tttcctgcccactgcctcaggaagggcttcccaaaaatgctgcctatgccattttcttca 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttcctgcccactgccccaggaagggcttcccaaaaatgctgcctatgccattttcttca 701
Query: 61 tagaacttattacttgcaccttggtttcataaccagagcagaagcatatagtatctagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tagaacttattacttgcaccttggtttcataaccagagcagaagcatatagtatctagta 641
Query: 121 agataatttatattcctgtagattgctcattaatatcctatatacactttactcttcaat 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agatagtttatattcctgtagattgctcattaatatcctatatacactttactcttcaat 581
Query: 181 tttgttgctacatcagccttgttaacaacttgtccttaaactttatacgtttttataagt 240
|||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct: 580 tttgttgctacatcagccttgttaacaacttgtccttattctttctacgtttttacaagt 521
Query: 241 ttcatcactctttattgcttattttgtgactttgtaaaaatgtgtc-tttttttgctttt 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 520 ttcatcactctttattgcttattttgtgactttgtaaaaatgtgtcttttttttgctttt 461
Query: 300 gtttttcatttatcacaccctcctgcttggtataattgtaaataataggattttgcttca 359
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 460 gtttttcatttatcacaccctcctgcttggtataattgtaaataatagaactttgcttca 401
Query: 360 ttatataaaatgtgcccagttatgctgtgatctgggtgacagttcactgtcgacctgtct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttatataaaatgtgcccagttatgctgtgatctgggtgacagttcactgtcgacctgtct 341
Query: 420 ttgttggatgctgtgagaggacagcaatatgtagagatcagagcttctgggtttatatgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttgttggatgctgtgagaggacagcaatatgtagagatcagagcttctgggtttatatgt 281
Query: 480 catcttatttattgtagcaatcgtggaacaggaaatgaaaaaggattggctttttgcgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catcttatttattgtagcaatcgtggaacaggaaatgaaaaaggattggctttttgcgcc 221
Query: 540 tcattaccgatactatgtaa 559
||||||||||||||||||||
Sbjct: 220 tcattaccgatactatgtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
