Query= MSMg01no405_j23.b1 MSMg01no405_j23.b1 CHROMAT_FILE:
MSMg01no405_j23.b1 PHD_FILE: MSMg01no405_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:40 2005
(465 letters)
>mm_chr14_18680895_18681757
Length = 863
Score = 832 bits (430), Expect = 0.0
Identities = 453/462 (98%), Gaps = 6/462 (1%)
Strand = Plus / Plus
Query: 6 gaattctccagga--ttccgcctagagtttctgtggaactgggtttttcccagagtagtc 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctccaggagttt--gcctagagtttctgtggaactgggtttttcccagagtagtc 263
Query: 64 tgcttgaccatcgcacattgaagtgccatgtaaaggacatacctggagcttcacagtcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcttgaccatcgcacattgaagtgccatgtaaaggacatacctggagcttcacagtcaa 323
Query: 124 caaagcctgctttggatttcattgggggctgtttttagggttctgagacataaccttgca 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 caaagcctgctttggatttcattgggg-ctgtttttagggttctgagacataaccttgca 382
Query: 184 tcttgctaaatctccctgtcctcagcaatgcatcaacaagggaggaggaagtacctacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttgctaaatctccctgtcctcagcaatgcatcaacaagggaggaggaagtacctacct 442
Query: 244 gtaggagaattagcagcaaacagactgtaatgctcatctcagtgctagggcagtctatga 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 gtaggagaattagcagcaaacagactgtaatgctcagctcagtgctagggcagtctatga 502
Query: 304 gcaaacatcaacttattcttaaaggtgaaagaaaaaaaaagaacaagaaaagtcctgctt 363
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 503 tcaaacatcaacttattcttaaaggtgaaagaaaacaaa-gaacaagaaaagtcctgctt 561
Query: 364 cttgctccagcatgtttttcatgattctggtccctttctctggtaggagcgctgtagaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttgctccagcatgtttttcatgattctggtccctttctctggtaggagcgctgtagaca 621
Query: 424 gagttctgactttatgtgggcacttgcaatacacatcttgcc 465
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gagttctgactttatgtgggcacttgcaatacacatcttgcc 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 863
Length adjustment: 10
Effective length of query: 455
Effective length of database: 853
Effective search space: 388115
Effective search space used: 388115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_j23.g1 MSMg01no405_j23.g1 CHROMAT_FILE:
MSMg01no405_j23.g1 PHD_FILE: MSMg01no405_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:40 2005
(220 letters)
>mm_chr14_18865491_18866111
Length = 621
Score = 398 bits (206), Expect = e-115
Identities = 215/218 (98%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 1 agaggtggaagaagtgagcttgtctgattcagttatagatctggggacttcactgc-cct 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 418 agaggtggaagaagtgagcttgtctgattcagttatagatctggggacttcactgctcct 359
Query: 60 aggagtgagtgagaatgcagcttaggctgtagagtatcagacaccaaggttaagatggat 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aggagtgagtgagaatgcaacttaggctgtagagtatcagacaccaaggttaagatggat 299
Query: 120 agctccagtgggggaggggttcagtgctgagagggatactgtggtgagggaggggtgcaa 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agctccggtgggggaggggttcagtgctgagagggatactgtggtgagggaggggtgcaa 239
Query: 180 ttctgagagggatactgtagtgggggaggggtgaagtg 217
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttctgagagggatactgtagtgggggaggggtgaagtg 201
Score = 99.3 bits (51), Expect = 2e-25
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 131 gggaggggttcagtgctgagagggatactgtggtgagggaggggtgcaattctgagaggg 190
||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 70 gggaggggtgcaatgctgagagggatactgtggtgagggaggggtgcaatgcttagaggg 11
Query: 191 atactgt 197
|||||||
Sbjct: 10 atactgt 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 621
Length adjustment: 9
Effective length of query: 211
Effective length of database: 612
Effective search space: 129132
Effective search space used: 129132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
