BAC Information

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BAC

Clone NameMSMg01-405L23
Chromosome14 (Build37)
Map Location 86,201,684 - 86,202,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L23.T7 (MSMg01no405_l23.b1)MSMg01-405L23.TJ (MSMg01no405_l23.g1)
ACCAG504105AG504106
length783775
length of high quality
(start - end)
442 (47 - 488)457 (81 - 537)
definitionCHROMAT_FILE: MSMg01no405_l23.b1 PHD_FILE: MSMg01no405_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:49 2005CHROMAT_FILE: MSMg01no405_l23.g1 PHD_FILE: MSMg01no405_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATCCTTGGTTGGTGGCTTGGTCCCGGGGTGTACTGGGTGGTGCAGGCA
GCTGATGTTGTTCTTCCTATGGGTTTGCAATCCCCCGCAGCTCCTTCAGT
TCTCCTGCTAACTCCCCCACCATGGTCCCTAAGTTCAGTTTGATGGTTGG
CTCCAACCATCCACATCTGTATTGGTCAGTTGCTGGCTGAACCTCCCAAA
GAGCAGTCATACAATGTTCTTGTCAGCAAGTGCCACTTGGTGATGGCATC
AGTGTCGGATTTGGTGTCTGTAGACAGGATGGACCCATGGGGGGGGCAGT
CCCTGGTGGGCCCTTCCGTCAGTCTCATCTCCATTGTTTTGTCCCTGTTC
TTCCTTTGGACAAGAACATTTCTAGGTTAAAACTTTTGAGATAGGAGAGT
GGTCCCATCCCACCACCGGGGGACCTGCCTGTCTACTGGAGGTGGTCTCT
ACAGGTTCTATCTCCCCTTCTCTGGAAAAATCATCCCTGCTGGGGCCAAA
ATTCCATAAAAAAGAACTATTTCAGAATCCTTATTTATTATACCTTGATT
ATCGAAGTTATTTTTTTATATCTAGGGAACCTTTGATAAAAAAAATGGAT
TATACACTGCGTGTATAGATCCAATTCCTTTAAGGCAAACGACATAAATT
TCACTTCTTTATTTGTATTTTCAACAACATTCAAAATTTCTCTTAAACTT
ATCTATCTCCCAAAAAAATTTTATCCCTCACCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGGCTCGTACTAGCTGA
GCCACCTCATTGGTTCCCTAGACTCTTACAGTTTAAGGAAAGAATTTCAG
TGTCTGAAAGCATATGCTGCAAGGGTGTAATTTTATTTTTTGAATAATTA
ATACTCATGGATTTTGAGACAAGAATATCTCTGAAAGTAGAAAGTGGGAG
GGGAGATATATTTTCCGAAAAAATAAAATAAAATAAACACATATAATGCA
GAGCCTGAACAAGACTAGAGAGAATTTGAAGTAAGAGCTGTCTTAGAAAA
TCCTGGATGGCTGTTTCTTCAACATGATAAAAATAGCTTGATATTTAAAA
TGAATTCTGTATTTATACTTAAAGACTCTGAGCTGACTCCTAGTGCATTA
ACATTCTGTGCACTGCAAGTGTGCTAATACAAAGTCATGTACATGTATAG
GTCAAGGGGGTCATTTGGTTTCTCTGGGCATTAGCACAAAGATACTTGTG
CCTTTCAATAGAGTCTGTAATTCATTTAAGTATTACATTTTCAGCTCTCA
ATTAGGGTTTCAAATCTCAGCAATCTGATGAATTTTCTCACCATCATGTC
TCACTTTTAATAAATTATACCCTACATGCATTCCTTGAATTTATGGGAAG
GGATCATGACCAACCTCCGCGCTTCTAAAAAATCTTTCTCATTTTTGGAT
AAAGAAACCTTCCCCCCTTCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l23.g1 MSMg01no405_l23.g1 CHROMAT_FILE:
MSMg01no405_l23.g1 PHD_FILE: MSMg01no405_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:49 2005
         (457 letters)



>mm_chr14_86201484_86202336
          Length = 853

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/457 (99%), Gaps = 4/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggctcgtactagctgagccacctcattggttccctagactcttacagtttaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtggctcgtactagctgagccacctcattggttccctagactcttacagtttaaggaa 260

                                                                       
Query: 61  agaatttcagtgtctgaaagcatatgctgcaagggtgtaattttattttttgaataatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatttcagtgtctgaaagcatatgctgcaagggtgtaattttattttttgaataatta 320

                                                                       
Query: 121 atactcatggattttgagacaagaatatctctgaaagtagaaagtgggaggggagatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactcatggattttgagacaagaatatctctgaaagtagaaagtgggaggggagatata 380

                                                                       
Query: 181 ttttccgaaaaaataaaataaaataaacacatataatgcagagcctgaacaagactagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttccgaaaaaataaaataaaataaacacatataatgcagagcctgaacaagactagag 440

                                                                       
Query: 241 agaatttgaagtaagagctgtcttagaaaatcctggatggctgtttcttcaacatgataa 300
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatttgaag----agctgtcttagaaaatcctggatggctgtttcttcaacatgataa 496

                                                                       
Query: 301 aaatagcttgatatttaaaatgaattctgtatttatacttaaagactctgagctgactcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatagcttgatatttaaaatgaattctgtatttatacttaaagactctgagctgactcc 556

                                                                       
Query: 361 tagtgcattaacattctgtgcactgcaagtgtgctaatacaaagtcatgtacatgtatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagtgcattaacattctgtgcactgcaagtgtgctaatacaaagtcatgtacatgtatag 616

                                                
Query: 421 gtcaagggggtcatttggtttctctgggcattagcac 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtcaagggggtcatttggtttctctgggcattagcac 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 853
Length adjustment: 10
Effective length of query: 447
Effective length of database: 843
Effective search space:   376821
Effective search space used:   376821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)